International audienc

The basidiomycete Marasmius quercophilus is commonly found during autumn on the decaying litter of the evergreen oak (Quercus ilex L.), a plant characteristic of Mediterranean forest. This white-rot fungus colonizes the leaf surface with rhizomorphs, causing a total bleaching of the leaf. In synthetic liquid media, this white-rot fungus has strong laccase activity. From a three-step chromatographic procedure, we purified a major isoform to homogeneity. The gene encodes a monomeric glycoprotein of approximately 63 kDa, with a 3.6 isoelectric point, that contains 12% carbohydrate. Spectroscopic analysis of the purified enzyme (UV/visible and electron paramagnetic resonance, atomic absorption) confirmed that it belongs to the "blue copper oxidase" family. With syringaldazine as the substrate, the enzyme's pH optimum was 4.5, the optimal temperature was 75°C, and the K m was 7.1 M. The structural gene, lac1, was cloned and sequenced. This gene encodes a 517-aminoacid protein 99% identical to a laccase produced by PM1, an unidentified basidiomycete previously isolated from wastewater from a paper factory in Spain. This similarity may be explained by the ecological distribution of the evergreen oak in Mediterranean forest.Litter mineralization is an important component of biogeochemical cycles in terrestrial environments. Lignin is the most difficult litter polymer to degrade, and the only organisms known to completely mineralize lignin are white-rot fungi (6,17). In the last two decades, several such organisms have been studied. At present, three main enzymes (i.e., manganese and lignin peroxidases and laccases) (15, 30) are implicated in the biodegradation of lignin. In addition to fundamental studies on lignin mineralization, these enzymes also have potential uses in industrial processes such as the bleaching of paper pulp (1) or the remediation of xenobiotics in effluents (3). There is no clear relationship between the distribution of ligninolytic enzymes and lignin degradation, since white-rot fungi with only one, with a combination of two, or with all three enzymes are known and can degrade lignin (15,27,34).The role of laccases in lignin degradation has only recently become well established (38). Laccases (p-diphenol oxidase, EC 1.10.3.2) are polyphenol oxidases that catalyze the reduction of oxygen to water with a concomitant oxidation of phenolic compounds. They are typically glycoproteins containing 2 to 4 atoms of copper per molecule and are found in plants and fungi (25,33,35).The evergreen oak (Quercus ilex) forms a characteristic forest climax common in the Western Mediterranean area (22,28). The leaf of Q. ilex, highly lignous and covered by a thick and waxy upper cuticle, is typical of sclerous plants exposed to dryness, particularly during the summer. The white-rot fungus Marasmius quercophilus colonizes dead leaves of Quercus ilex (32). Under favorable temperature and humidity conditions, i.e., in autumn and sometimes in May and June, this fungus becomes predominant among litter fungi and produces ma...

1-Aminocyclopropane-1-carboxylic acid oxidase (ACCO) is a nonheme Fe(II)-containing enzyme that is related to the 2-oxoglutarate-dependent dioxygenase family. The binding of substrates/cofactors to tomato ACCO was investigated through kinetics, tryptophan fluorescence quenching, and modeling studies. α-Aminophosphonate analogs of the substrate (1-aminocyclopropane-1-carboxylic acid, ACC), 1-aminocyclopropane-1-phosphonic acid (ACP) and (1-amino-1-methyl)ethylphosphonic acid (AMEP), were found to be competitive inhibitors versus both ACC and bicarbonate (HCO(3)(-)) ions. The measured dissociation constants for Fe(II) and ACC clearly indicate that bicarbonate ions improve both Fe(II) and ACC binding, strongly suggesting a stabilization role for this cofactor. A structural model of tomato ACCO was constructed and used for docking experiments, providing a model of possible interactions of ACC, HCO(3)(-), and ascorbate at the active site. In this model, the ACC and bicarbonate binding sites are located close together in the active pocket. HCO(3)(-) is found at hydrogen-bond distance from ACC and interacts (hydrogen bonds or electrostatic interactions) with residues K158, R244, Y162, S246, and R300 of the enzyme. The position of ascorbate is also predicted away from ACC. Individually docked at the active site, the inhibitors ACP and AMEP were found coordinating the metal ion in place of ACC with the phosphonate groups interacting with K158 and R300, thus interlocking with both ACC and bicarbonate binding sites. In conclusion, HCO(3)(-) and ACC together occupy positions similar to the position of 2-oxoglutarate in related enzymes, and through a hydrogen bond HCO(3)(-) likely plays a major role in the stabilization of the substrate in the active pocket.