Cell migration plays a major role in development, physiology, and disease, and is frequently evaluated in vitro by the monolayer wound healing assay. The assay analysis, however, is a time-consuming task that is often performed manually. In order to accelerate this analysis, we have developed TScratch, a new, freely available image analysis technique and associated software tool that uses the fast discrete curvelet transform to automate the measurement of the area occupied by cells in the images. This tool helps to significantly reduce the time needed for analysis and enables objective and reproducible quantification of assays. The software also offers a graphical user interface which allows easy inspection of analysis results and, if desired, manual modification of analysis parameters. The automated analysis was validated by comparing its results with manual-analysis results for a range of different cell lines. The comparisons demonstrate a close agreement for the vast majority of images that were examined and indicate that the present computational tool can reproduce statistically significant results in experiments with well-known cell migration inhibitors and enhancers.
IntroductionThe turnover of Ringer´s solutions is greatly dependent on the physiological situation, such as the presence of dehydration or anaesthesia. The present study evaluates whether the kinetics is affected by previous infusion of colloid fluid.MethodsTen male volunteers with a mean age of 22 years underwent three infusion experiments, on separate days and in random order. The experiments included 10 mL/kg of 6% hydroxyethyl starch 130/0.4 (Voluven™), 20 mL/kg of Ringer's acetate, and a combination of both, where Ringer´s was administered 75 minutes after the starch infusion ended. The kinetics of the volume expansion was analysed by non-linear least- squares regression, based on urinary excretion and serial measurement of blood haemoglobin concentration for up to 420 minutes.ResultsThe mean volume of distribution of the starch was 3.12 L which agreed well with the plasma volume (3.14 L) estimated by anthropometry. The volume expansion following the infusion of starch showed monoexponential elimination kinetics with a half-life of two hours. Two interaction effects were found when Ringer´s acetate was infused after the starch. First, there was a higher tendency for Ringer´s acetate to distribute to a peripheral compartment at the expense of the plasma volume expansion. The translocated amount of Ringer´s was 70% higher when HES had been infused earlier. Second, the elimination half-life of Ringer´s acetate was five times longer when administered after the starch (88 versus 497 minutes, P <0.02).ConclusionsStarch promoted peripheral accumulation of the later infused Ringer´s acetate solution and markedly prolonged the elimination half-life.Trial registrationClinicalTrials.gov: NCT01195025
In this paper, we study a lattice Boltzmann method for the advectiondiffusion equation with Neumann boundary conditions on general boundaries. A novel mass conservative scheme is introduced for implementing such boundary conditions, and is analyzed both theoretically and numerically.Second order convergence is predicted by the theoretical analysis, and numerical investigations show that the convergence is at or close to the predicted rate. The numerical investigations include time-dependent problems and a steady-state diffusion problem for computation of effective diffusion coefficients.
Background: Despite significant progress in imaging technologies, the efficient detection of edges and elongated features in images of intracellular and multicellular structures acquired using light or electron microscopy is a challenging and time consuming task in many laboratories.
Probe diffusion was determined in phase separated bicontinuous gels prepared by acid-induced gelation of the whey protein isolate-gellan gum system. The topological characterization of the phase-separated gel systems is achieved by confocal microscopy and the diffusion measurements are performed using pulsed field gradient (PFG) NMR and fluorescence recovery after photo-bleaching (FRAP). These two techniques gave complementary information about the mass transport at different time- and length scales, PFG NMR provided global diffusion rates in the gel systems, while FRAP enabled the measurements of diffusion in different phases of the phase-separated gels. The results revealed that the phase-separated gel with the largest characteristic wavelength had the fastest diffusion coefficient, while the gel with smaller microstructures had a slower probe diffusion rate. By using the diffusion data obtained by FRAP and the structural data from confocal microscopy, modelling through the lattice-Boltzmann framework was carried out to simulate the global diffusion and verify the validity of the experimental measurements. With this approach it was found that discrepancies between the two experimental techniques can be rationalized in terms of probe distribution between the different phases of the system. The combination of different techniques allowed the determination of diffusion in a phase-separated biopolymer gel and gave a clearer picture of this complex system. We also illustrate the difficulties that can arise if precautions are not taken to understand the system-probe interactions.
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