The majority of research on efficient and scalable algorithms in computational science and engineering has focused on the forward problem: given parameter inputs, solve the governing equations to determine output quantities of interest. In contrast, here we consider the broader question: given a (large-scale) model containing uncertain parameters, (possibly) noisy observational data, and a prediction quantity of interest, how do we construct efficient and scalable algorithms to (1) infer the model parameters from the data (the deterministic inverse problem), (2) quantify the uncertainty in the inferred parameters (the Bayesian inference problem), and (3) propagate the resulting uncertain parameters through the model to issue predictions with quantified uncertainties (the forward uncertainty propagation problem)?We present efficient and scalable algorithms for this end-to-end, data-to-prediction process under the Gaussian approximation and in the context of modeling the flow of the Antarctic ice sheet and its effect on loss of grounded ice to the ocean. The ice is modeled as a viscous, incompressible, creeping, shear-thinning fluid. The observational data come from satellite measurements of surface ice flow velocity, and the uncertain parameter field to be inferred is the basal sliding parameter, represented by a heterogeneous coefficient in a Robin boundary condition at the base of the ice sheet. The prediction quantity of interest is the present-day ice mass flux from the Antarctic continent to the ocean.We show that the work required for executing this data-to-prediction process-measured in number of forward (and adjoint) ice sheet model solves-is independent of the state dimension, parameter dimension, data dimension, and the number of processor cores. The key to achieving this dimension independence is to exploit the fact that, despite their large size, the observational data typically provide only sparse information on model parameters. This property can be exploited to construct a low rank approximation of the linearized parameter-toobservable map via randomized SVD methods and adjoint-based actions of Hessians of the data misfit functional.
Abstract. The forest-of-octrees approach to parallel adaptive mesh refinement and coarsening (AMR) has recently been demonstrated in the context of a number of large-scale PDE-based applications. Efficient reference software has been made freely available to the public both in the form of the standalone p4est library and more indirectly by the general-purpose finite element library deal.II, which has been equipped with a p4est backend.Although linear octrees, which store only leaf octants, have an underlying tree structure by definition, it is not fully exploited in previously published mesh-related algorithms. This is because tree branches are not explicitly stored, and because the topological relationships in meshes, such as the adjacency between cells, introduce dependencies that do not respect the octree hierarchy. In this work we combine hierarchical and topological relationships between octants to design efficient recursive algorithms that operate on distributed forests of octrees.We present three important algorithms with recursive implementations. The first is a parallel search for leaves matching any of a set of multiple search criteria, such as leaves that contain points or intersect polytopes. The second is a ghost layer construction algorithm that handles arbitrarily refined octrees that are not covered by previous algorithms, which require a 2:1 condition between neighboring leaves. The third is a universal mesh topology iterator. This iterator visits every cell in a partition, as well as every interface (face, edge and corner) between these cells. The iterator calculates the local topological information for every interface that it visits, taking into account the nonconforming interfaces that increase the complexity of describing the local topology. To demonstrate the utility of the topology iterator, we use it to compute the numbering and encoding of higher-order C 0 nodal basis functions used for finite elements.We analyze the complexity of the new recursive algorithms theoretically, and assess their performance, both in terms of single-processor efficiency and in terms of parallel scalability, demonstrating good weak and strong scaling up to 458k cores of the JUQUEEN supercomputer.
Abstract. Motivated by the need for efficient and accurate simulation of the dynamics of the polar ice sheets, we design high-order finite element discretizations and scalable solvers for the solution of nonlinear incompressible Stokes equations. In particular, we focus on power-law, shear thinning rheologies commonly used in modeling ice dynamics and other geophysical flows. We use nonconforming hexahedral meshes and the conforming inf-sup stable finite element velocity-pressure pairings, where k ≥ 2 is the polynomial order of the velocity space. To solve the nonlinear equations, we propose a Newton-Krylov method with a block upper triangular preconditioner for the linearized Stokes systems. The diagonal blocks of this preconditioner are sparse approximations of the (1,1)-block and of its Schur complement. The (1,1)-block is approximated using linear finite elements based on the nodes of the high-order discretization, and the application of its inverse is approximated using algebraic multigrid with an incomplete factorization smoother. This preconditioner is designed to be efficient on anisotropic meshes, which are necessary to match the high aspect ratio domains typical for ice sheets. As part of this work, we develop and make available extensions to two libraries-a hybrid meshing scheme for the p4est parallel adaptive mesh refinement library, and a modified smoothed aggregation scheme for PETSc-to improve their support for solving PDEs in high aspect ratio domains. In a comprehensive numerical study, we find that our solver yields fast convergence that is independent of the element aspect ratio, the occurrence of nonconforming interfaces, and of the mesh refinement, and that depends only weakly on the polynomial finite element order. We simulate the ice flow in a realistic description of the Antarctic ice sheet derived from field data, and study the parallel scalability of our solver for problems with up to 383 million unknowns.Key words. Viscous incompressible flow, nonlinear Stokes equations, shear-thinning, high-order finite elements, preconditioning, multigrid, Newton-Krylov method, ice sheet modeling, Antarctic ice sheet.1. Introduction. We design high-order finite element discretizations and scalable solvers for incompressible nonlinear Stokes equations describing creeping flows of power-law rheology fluids. Applications include ice sheet dynamics [31], mantle convection [53], magma dynamics [44] and other problems involving non-Newtonian fluids [26]. Among the main challenges for the solution of these problems are the presence of local features that emerge from the nonlinear constitutive relation, the strongly varying and anisotropic coefficients arising upon linearization, the incompressibility condition leading to indefinite matrix problems, complex geometry and boundary conditions, a wide range of length scales that may require highly-adapted meshes with high aspect ratios, and large problem sizes that necessitate parallel solution on large supercomputers. Our approach to cope with these challenges ...
We consider multiphysics applications from algorithmic and architectural perspectives, where “algorithmic” includes both mathematical analysis and computational complexity, and “architectural” includes both software and hardware environments. Many diverse multiphysics applications can be reduced, en route to their computational simulation, to a common algebraic coupling paradigm. Mathematical analysis of multiphysics coupling in this form is not always practical for realistic applications, but model problems representative of applications discussed herein can provide insight. A variety of software frameworks for multiphysics applications have been constructed and refined within disciplinary communities and executed on leading-edge computer systems. We examine several of these, expose some commonalities among them, and attempt to extrapolate best practices to future systems. From our study, we summarize challenges and forecast opportunities.
Many problems are characterized by dynamics occurring on a wide range of length and time scales. One approach to overcoming the tyranny of scales is adaptive mesh refinement/coarsening (AMR), which dynamically adapts the mesh to resolve features of interest. However, the benefits of AMR are difficult to achieve in practice, particularly on the petascale computers that are essential for difficult problems. Due to the complex dynamic data structures and frequent load balancing, scaling dynamic AMR to hundreds of thousands of cores has long been considered a challenge. Another difficulty is extending parallel AMR techniques to high-order-accurate, complex-geometry-respecting methods that are favored for many classes of problems. Here we present new parallel algorithms for parallel dynamic AMR on forest-ofoctrees geometries with arbitrary-order continuous and discontinuous finite/spectral element discretizations. The implementations of these algorithms exhibit excellent weak and strong scaling to over 224,000 Cray XT5 cores for multiscale geophysics problems.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2025 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.