Neuroanatomically precise, genome-wide maps of transcript distributions are critical resources to complement genomic sequence data and to correlate functional and genetic brain architecture. Here we describe the generation and analysis of a transcriptional atlas of the adult human brain, comprising extensive histological analysis and comprehensive microarray profiling of ~900 neuroanatomically precise subdivisions in two individuals. Transcriptional regulation varies enormously by anatomical location, with different regions and their constituent cell types displaying robust molecular signatures that are highly conserved between individuals. Analysis of differential gene expression and gene co-expression relationships demonstrates that brain-wide variation strongly reflects the distributions of major cell classes such as neurons, oligodendrocytes, astrocytes and microglia. Local neighbourhood relationships between fine anatomical subdivisions are associated with discrete neuronal subtypes and genes involved with synaptic transmission. The neocortex displays a relatively homogeneous transcriptional pattern, but with distinct features associated selectively with primary sensorimotor cortices and with enriched frontal lobe expression. Notably, the spatial topography of the neocortex is strongly reflected in its molecular topography— the closer two cortical regions, the more similar their transcriptomes. This freely accessible online data resource forms a high-resolution transcriptional baseline for neurogenetic studies of normal and abnormal human brain function.
Abstract.A centroidal Voronoi tessellation is a Voronoi tessellation whose generating points are the centroids (centers of mass) of the corresponding Voronoi regions. We give some applications of such tessellations to problems in image compression, quadrature, finite difference methods, distribution of resources, cellular biology, statistics, and the territorial behavior of animals. We discuss methods for computing these tessellations, provide some analyses concerning both the tessellations and the methods for their determination, and, finally, present the results of some numerical experiments.
We characterize the class CG(s) of matrices A for which the linear system Ax b can be solved by an s-term conjugate gradient method. We show that, except for a few anomalies, the class CG(s) consists of matrices A for which conjugate gradient methods are already known. These matrices are the Hermitian matrices,
We address the degree-diameter problem for Cayley graphs of Abelian groups (Abelian graphs), both directed and undirected. The problem turns out to be closely related to the problem of finding efficient lattice coverings of Euclidean space by shapes such as octahedra and tetrahedra; we exploit this relationship in both directions. For 2 generators (dimensions) these methods yield optimal Abelian graphs with a given diameter k. (The results in two dimensions are not new; they are given in the literature of distributed loop networks.) We find an undirected Abelian graph with 3 generators and a given diameter k which we conjecture to be as large as possible; for the directed case, we obtain partial results. These results are connected to efficient lattice coverings of R 3 by octahedra or by tetrahedra; computations on Cayley graphs lead us to such lattice coverings which we conjecture to be optimal. (The problem of finding such optimal coverings can be reduced to a finite number of nonlinear optimization problems.) We discuss the asymptotic behavior of the Abelian degreediameter problem for large numbers of generators. The graphs obtained here are substantially better than traditional toroidal meshes, but, in the simpler undirected cases, retain certain desirable features such as good routing algorithms, easy constructibility, and the ability to host mesh-connected numerical algorithms without any increase in communication times.
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