This work is a study of plankton food web structure and carbon flow in March and September 1997 in the Aegean Sea, area of outflow of Black Sea waters in the Mediterranean Sea. Biomass and production of autotrophs were measured by size fraction as well as bacterial biomass and production; furthermore, we studied heterotrophic nanoflagellates (HNAN), ciliates and mesozooplankton biomass, copepod production and grazing impact on phytoplankton. The obtained low values of nutrients and plankton biomass and production confirmed the oligotrophic character of this region. Despite the fact that there was no significant horizontal variability in the spatial distribution of nutrients throughout the study area, the planktonic biomass and production revealed a gradual decrease from the Northeast Aegean (NEA) towards the South Aegean (SA). In the Northeast Aegean, a large part of the fixed carbon was channelled through the microbial food web towards copepods; in contrast there was a low transfer of energy in the South Aegean where the multivorous food web was developed. Throughout the study area, almost 60 -70% of autotrophic biomass and primary production was performed by cells < 3 Am.

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The Aegean Sea is a region of special interest for the Mediterranean oceanographic community, as one of the densewater formation sites of the Mediterranean, driving its thermohaline circulation. Early oceanographic literature exhibits significantly varying opinions regarding the role of the Aegean as a contributor to the water masses of the eastern Mediterranean. The higher temporal and spatial resolution studies that followed the introduction of ConductivityTemperature-Depth (CTD) profilers in the 1980s, revealed that the various scenarios were within the interannual variability of dense water formation in the region. A peak in this variability was the appearance of the Eastern Mediterranean Transient event in the early 1990s. This phenomenon showed that the Aegean Sea has the potential to function as a source of dense water for the eastern Mediterranean; however, it takes over this role only sporadically, depending on the meteorological conditions over the eastern Mediterranean and, possibly, central/eastern Europe. The North Atlantic oscillation appears to be a contributor to this bimodal behaviour. Palaeoceanographic information has confirmed the large sensitivity of the Aegean Sea to climatic variability. Based on the available information, possible scenarios are examined for the response of the Aegean to the current climatic trends.

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