Spiking neural network models are increasingly establishing themselves as an effective tool for simulating the dynamics of neuronal populations and for understanding the relationship between these dynamics and brain function. Furthermore, the continuous development of parallel computing technologies and the growing availability of computational resources are leading to an era of large-scale simulations capable of describing regions of the brain of ever larger dimensions at increasing detail. Recently, the possibility to use MPI-based parallel codes on GPU-equipped clusters to run such complex simulations has emerged, opening up novel paths to further speed-ups. NEST GPU is a GPU library written in CUDA-C/C++ for large-scale simulations of spiking neural networks, which was recently extended with a novel algorithm for remote spike communication through MPI on a GPU cluster. In this work we evaluate its performance on the simulation of a multi-area model of macaque vision-related cortex, made up of about 4 million neurons and 24 billion synapses and representing 32 mm2 surface area of the macaque cortex. The outcome of the simulations is compared against that obtained using the well-known CPU-based spiking neural network simulator NEST on a high-performance computing cluster. The results show not only an optimal match with the NEST statistical measures of the neural activity in terms of three informative distributions, but also remarkable achievements in terms of simulation time per second of biological activity. Indeed, NEST GPU was able to simulate a second of biological time of the full-scale macaque cortex model in its metastable state 3.1× faster than NEST using 32 compute nodes equipped with an NVIDIA V100 GPU each. Using the same configuration, the ground state of the full-scale macaque cortex model was simulated 2.4× faster than NEST.
Working Memory (WM) is a cognitive mechanism that enables temporary holding and manipulation of information in the human brain. This mechanism is mainly characterized by a neuronal activity during which neuron populations are able to maintain an enhanced spiking activity after being triggered by a short external cue. In this study, we implement, using the NEST simulator, a spiking neural network model in which the WM activity is sustained by a mechanism of short-term synaptic facilitation related to presynaptic calcium kinetics. The model, which is characterized by leaky integrate-and-fire neurons with exponential postsynaptic currents, is able to autonomously show an activity regime in which the memory information can be stored in a synaptic form as a result of synaptic facilitation, with spiking activity functional to facilitation maintenance. The network is able to simultaneously keep multiple memories by showing an alternated synchronous activity which preserves the synaptic facilitation within the neuron populations holding memory information. The results shown in this study confirm that a WM mechanism can be sustained by synaptic facilitation.
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