Recebido em 18/12/2018; aceito em 29/04/2019; publicado na web em 16/05/2019 The upscaling of Xylaria cubensis, an endophyte of Eugenia brasiliensis (Myrtaceae), in PDB medium led to the isolation of known compounds including cytochalasin D (7) and cytochalasin C (8), which exhibited relatively higher phytotoxic activity in all the concentrations tested compared to the commercial herbicide GOAL ®. Besides the aforementioned metabolites, one diketopiperazine (DKP) and two isocoumarins were isolated and two DKPs were also identified in the mixture. The structures were determined by 1D and 2D 1 H NMR, MS analyses and were compared with the literature.