We collected and cleaned a large data set on publications in statistics. The data set consists of the coauthor relationships and citation relationships of 83, 331 papers published in 36 representative journals in statistics, probability, and machine learning, spanning 41 years. The data set allows us to construct many different networks, and motivates a number of research problems about the research patterns and trends, research impacts, and network topology of the statistics community. In this paper we focus on (i) using the citation relationships to estimate the research interests of authors, and (ii) using the coauthor relationships to study the network topology.Using co-citation networks we constructed, we discover a "statistics triangle", reminiscent of the statistical philosophy triangle (Efron, 1998). We propose new approaches to constructing the "research map" of statisticians, as well as the "research trajectory" for a given author to visualize his/her research interest evolvement. Using coauthorship networks we constructed, we discover a multi-layer community tree and produce a Sankey diagram to visualize the author migrations in different sub-areas. We also propose several new metrics for research diversity of individual authors. We find that "Bayes", "Biostatistics", and "Nonparametric" are three primary areas in statistics. We also identify 15 sub-areas, each of which can be viewed as a weighted average of the primary areas, and identify several underlying reasons for the formation of co-authorship communities. We also find that the research interests of statisticians have evolved significantly in the 41-year time window we studied: some areas (e.g., biostatistics, high-dimensional data analysis, etc.) have become increasingly more popular. The research diversity of statisticians may be lower than we might have expected. For example, for the personalized networks of most authors, the p-values of the proposed significance tests are relatively large.
Eight new khayanolides, named thaixylomolins G-N (1-8), two new phragmalins (9 and 10), and two new mexicanolides (11 and 12) were obtained from the seeds of the Trang mangrove plant Xylocarpus moluccensis. The absolute configurations of these limonoids, except for the stereocenter at C-6 of 11 and 12, were assigned by experimental and TDDFT calculated electronic circular dichroism spectra. The khayanolides may be classified into two subclasses, one of which has a C-2 carbonyl and a 3β-acetoxy group, whereas the other possesses a 2β-acetoxy and a C-3 carbonyl function. Khayanolides, rearranged phragmalin-type limonoids, are reported for the first time from plants of the mangrove genus Xylocarpus. The structure of moluccensin J, a known 30-ketophragmalin containing a Δ(8(14)) double bond, was revised to be a khayanolide, named thaixylomolin K. The antiviral activities of the isolates against pandemic influenza A virus (subtype H1N1) were tested by the assay of cytopathic effect inhibition. Three khayanolides, viz., thaixylomolins I, K, and M, exhibited moderate anti-H1N1 activities. The most potent one, thaixylomolin I (IC50 = 77.1 ± 8.7 μM), showed stronger inhibitory activity than that of the positive control, ribavirin (IC50 = 185.9 ± 16.8 μM).
To explore the implications of lipid catabolism-associated genes in gastrointestinal stromal tumors, we reappraised transcriptomic and genomic datasets and identified copy-gained and differentially upregulated PLCB4 gene associated with tumor progression. On full sections, PLCB4 mRNA abundance and PLCß4 immunoexpression were validated in 70 cases. On tissue microarrays, PLCB4 gene copies and PLCß4 immunoexpression were both informative in 350 cases with KIT/PDGFRA/BRAF genotypes noted in 213. In GIST48 cell line, we stably silenced PLCB4 and YAP1 to characterize their functional effects and regulatory link. Compared with normal tissue, PLCB4 mRNA abundance significantly increased across tumors of various risk levels (p<0.001), and was strongly correlated with immunoexpression level (p<0.001, r=0.468). Including polysomy (12.6%) and amplification (17.4%), PLCB4 copy gain was detected in 105 (30%) cases and significantly more frequent (p<0.001) in cases exhibiting higher PLCß4 immunoexpression (82/175). Copy gain and protein overexpression were modestly associated with unfavorable genotypes (both p<0.05), strongly associated with increased size, mitosis, and risk levels defined by both the NIH and NCCN schemes (all p<0.001), and univariately predictive of shorter disease-free survival (both p<0.0001). In PLCß4-overexpressing cases, PLCB4 copy gain still predicted worse prognosis (p<0.0001). In a multivariate comparison, both overexpression (p=0.007, hazard ratio: 2.454) and copy gain (p=0.031, hazard ratio: 1.892) exhibited independent impact. In vitro, YAP1 increased PLCB4 mRNA and protein expression, and both molecules significantly promoted cell proliferation. Being driven by copy gain or YAP1, PLCß4 is a novel overexpressed enzyme regulating lipid catabolism that promotes cell proliferation and independently confers a worse prognosis.
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