Two extended basis sets (termed 5–31G and 6–31G) consisting of atomic orbitals expressed as fixed linear combinations of Gaussian functions are presented for the first row atoms carbon to fluorine. These basis functions are similar to the 4–31G set [J. Chem. Phys. 54, 724 (1971)] in that each valence shell is split into inner and outer parts described by three and one Gaussian function, respectively. Inner shells are represented by a single basis function taken as a sum of five (5–31G) or six (6–31G) Gaussians. Studies with a number of polyatomic molecules indicate a substantial lowering of calculated total energies over the 4–31G set. Calculated relative energies and equilibrium geometries do not appear to be altered significantly.
An extended basis set of atomic functions expressed as fixed linear combinations of Gaussian functions is presented for hydrogen and the first-row atoms carbon to fluorine. In this set, described as 4–31 G, each inner shell is represented by a single basis function taken as a sum of four Gaussians and each valence orbital is split into inner and outer parts described by three and one Gaussian function, respectively. The expansion coefficients and Gaussian exponents are determined by minimizing the total calculated energy of the atomic ground state. This basis set is then used in single-determinant molecular-orbital studies of a group of small polyatomic molecules. Optimization of valence-shell scaling factors shows that considerable rescaling of atomic functions occurs in molecules, the largest effects being observed for hydrogen and carbon. However, the range of optimum scale factors for each atom is small enough to allow the selection of a standard molecular set. The use of this standard basis gives theoretical equilibrium geometries in reasonable agreement with experiment.
The conformational flexibility [1] of l-iduronic acid, a typical monosaccharide component of heparin, most probably explains its remarkable protein adaptability and resulting diverse biological activities. [2, 3] The analysis of this feature has been the matter of a long controversy, [4] which not surprisingly originates from the complexity of the heparin primary structure. A major breakthrough in heparinology has been the identification, [5, 6] followed by the total synthesis, [7, 8] of a well-defined pentasaccharide sequence inserted into the heparin chain, which specifically binds to antithrombin (AT)Ða physiological inhibitor of activated blood coagulation factorsÐand amplifies its action. This is the molecular origin of the anticoagulant and antithrombotic activities of heparin.The 1 H NMR spectroscopic data of this original synthetic pentasaccharide in aqueous solution were easily extracted and moleculeº, camphor, where Dn/n % 10 À8 was achieved. [9] Even if more recent techniques could provide higher resolving power, [10] a full rotational analysis for the IR spectrum of camphor would be more difficult than for fluorooxirane, and the experiment itself does not provide a value for D pv E. The data calculated here are also sufficient for an estimate of the equilibrium constant for racemization [28] from Equations (9) and (10) where x and y explicitly show the deviation from unity of the prefactor and the exponential factor.Within the SHAA , [20, 21] the equilibrium constant for racemization at 300 K is K RYS eq % 1 8.20 Â 10 À16 with x %À 1.01 Â 10 À17 and y % 8.30 Â 10 À16 . These values have been obtained with perturbation theory and high precision arithmetic (MAPLE V).
The 6-31 G* and 6-31 G•• basis sets previously introduced for first-row atoms have been extended through the second-row of the periodic table. Equilibrium geometries for one-heavy-atom hydrides calculated for the twobasis sets and using Hartree-Fock wave functions are in good agreement both with each other and with the experimental data. HF/6-31G• structures, obtained for two-heavy-atom hydrides and for a variety of hypervalent second-row molecules, are also in excellent accord with experimental equilibrium geometries. No large deviations between calculated and experimental single bond lengths have been noted, in contrast to previous work on analogous first-row compounds, where limiting Hartree-Fock distances were in error by up to a tenth of an angstrom. Equilibrium geometries calculated at the HF /6-31 G level are consistently in better agreement with the experimental data than are those previously obtained using the simple split-valance 3-21G basis set for both normal-and hypervalent compounds. Normal-mode vibrational frequencies derived from 6-31G• level calculations are consistently larger than the corresponding experimental values, typically by \0%-15%; they are of much more uniform quality than those obtained from the 3-21G basis set. Hydrogenation energies calculated for normal-and hypervalent compounds are in moderate accord with experimental data, although in some instances large errors appear. Calculated energies relating to the stabilities of single and multiple bonds are in much better accord with the experimental energy differences.
A summary of the technical advances that are incorporated in the fourth major release of the Q-Chem quantum chemistry program is provided, covering approximately the last seven years. These include developments in density functional theory methods and algorithms, nuclear magnetic resonance (NMR) property evaluation, coupled cluster and perturbation theories, methods for electronically excited and openshell species, tools for treating extended environments, algorithms for walking on potential surfaces, analysis tools, energy and electron transfer modelling, parallel computing capabilities, and graphical user interfaces. In addition, a selection of example case studies that illustrate these capabilities is given. These include extensive benchmarks of the comparative accuracy of modern density functionals for bonded and non-bonded interactions, tests of attenuated second order Møller-Plesset (MP2) methods for intermolecular interactions, a variety of parallel performance benchmarks, and tests of the accuracy of implicit solvation models. Some specific chemical examples include calculations on the strongly correlated Cr 2 dimer, exploring zeolitecatalysed ethane dehydrogenation, energy decomposition analysis of a charged ter-molecular complex arising from glycerol photoionisation, and natural transition orbitals for a Frenkel exciton state in a nine-unit model of a self-assembling nanotube.Keywords quantum chemistry, software, electronic structure theory, density functional theory, electron correlation, computational modelling, Q-Chem Disciplines Chemistry CommentsThis article is from Molecular Physics: An International Journal at the Interface Between Chemistry and Physics 113 (2015): 184, doi:10.1080/00268976.2014. RightsWorks produced by employees of the U.S. Government as part of their official duties are not copyrighted within the U.S. The content of this document is not copyrighted. Authors 185A summary of the technical advances that are incorporated in the fourth major release of the Q-CHEM quantum chemistry program is provided, covering approximately the last seven years. These include developments in density functional theory methods and algorithms, nuclear magnetic resonance (NMR) property evaluation, coupled cluster and perturbation theories, methods for electronically excited and open-shell species, tools for treating extended environments, algorithms for walking on potential surfaces, analysis tools, energy and electron transfer modelling, parallel computing capabilities, and graphical user interfaces. In addition, a selection of example case studies that illustrate these capabilities is given. These include extensive benchmarks of the comparative accuracy of modern density functionals for bonded and non-bonded interactions, tests of attenuated second order Møller-Plesset (MP2) methods for intermolecular interactions, a variety of parallel performance benchmarks, and tests of the accuracy of implicit solvation models. Some specific chemical examples include calculations on the strongly corre...
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