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Pinggu peach (Prunus persica (L.)) has great economic and ecological value in north China. As a plant, the peach is naturally colonized by a variety of endophytic fungi, which are very important for tree growth and health. However, the mycobiota composition and their affecting factors of the peach trees are still unknown. In our study, the fungal communities in flowers, leaves, stems, and roots of the three cultivars (Dajiubao, Qingfeng, and Jingyan) of Pinggu peach trees and in the rhizosphere soils were investigated by both Illumina Miseq sequencing of ITS rDNA and traditional culturing methods. For organs, except for roots, flowers had the highest fungal richness and diversity, while the leaves had the lowest richness and diversity. Ascomycota and Basidiomycota were the most abundant phyla among samples. The fungal assemblage composition of each organ was distinctive. Fungal communities of the three cultivars also differed from each other. The fungal community structure significantly correlated with soil pH, soil K, fruit soluble solid content, and fruit titratable acidity with the redundancy analysis (RDA). Most isolated fungal strains can be found within high-throughput sequencing identified taxa. This study indicates that plant organs, the cultivars, the soil, and fruit properties may have profound effects on the endophytic fungal community structure associated with Pinggu peach trees. With this study, microbiota-mediated pathogen protection and fruit quality promotion associated with peach trees could be further studied.

Endophytic fungi exist in all known plants and play an important role for plant growth and health. As an important forest tree the Jingbai pear (the best quality cultivar of Pyrus ussuriensi Maxim. ex Rupr.) has great ecological as well as economic value in north China. However, the mycobiota of the pear tree is still unknown. In this study, the fungal communities in different organs of the tree and in rhizosphere soils were investigated by Illumina Miseq sequencing of ITS rDNA. For organs, the roots had the highest fungal richness and diversity, while the flowers had the lowest richness and diversity. The results demonstrated that each of the organs investigated harbored a distinctive fungal assemblage. Overall, Ascomycota was the most abundant phyla, followed by Basidiomycota and Zygomycota. Fungal communities from the different soils also differed from each other. The redundancy analysis (RDA) showed that fungal community structure correlated significantly with soil temperature, soil pH, soil nitrogen and soil carbon contents. The results indicate that plant organs, site conditions and soil properties may have important influences on the endophytic fungal community structure associated with Jingbai pear trees.

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