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Temperature variation has been widely demonstrated to produce significant effect on modal frequencies that even exceed the effect of actual damage. In order to eliminate the temperature effect on modal frequency, an effective method is to construct quantitative models which accurately predict the modal frequency corresponding to temperature variation. In this paper, principal component analysis (PCA) is conducted on the temperatures taken from all embedded thermocouples for extracting input parameters of regression models. Three regression-based numerical models using multiple linear regression (MLR), back-propagation neural network (BPNN), and support vector regression (SVR) techniques are constructed to capture the relationships between modal frequencies and temperature distributions from measurements of a concrete beam during a period of forty days of monitoring. A comparison with respect to the performance of various optimally configured regression models has been performed on measurement data. Results indicate that the SVR exhibits a better reproduction and prediction capability than BPNN and MLR models for predicting the modal frequencies with respect to nonuniformly distributed temperatures. It is succeeded that temperature effects on modal frequencies can be effectively eliminated based on the optimally formulated SVR model.