Several biogeographic barriers in the Central African highlands have reduced gene flow among populations of many terrestrial species in predictable ways. Yet, a comprehensive understanding of mechanisms underlying species divergence in the Afrotropics can be obscured by unrecognized levels of cryptic diversity, particularly in widespread species. We implemented a multilocus phylogeographic approach to examine diversity within the widely distributed Central African pygmy chameleon, Rhampholeon boulengeri. Gene-tree analyses coupled with a comparative coalescent-based species delimitation framework revealed R. boulengeri as a complex of at least six genetically distinct species. The spatiotemporal speciation patterns for these cryptic species conform to general biogeographic hypotheses supporting vicariance as the main factor behind patterns of divergence in the Albertine Rift, a biodiversity hotspot in Central Africa. However, we found that parapatric species and sister species inhabited adjacent habitats, but were found in largely non-overlapping elevational ranges in the Albertine Rift, suggesting that differentiation in elevation was also an important mode of divergence. The phylogeographic patterns recovered for the genus-level phylogeny provide additional evidence for speciation by isolation in forest refugia, and dating estimates indicated that the Miocene was a significant period for this diversification. Our results highlight the importance of investigating cryptic diversity in widespread species to improve understanding of diversification patterns in environmentally diverse regions such as the montane Afrotropics.

The geographically widespread species Afrixalus laevis (Anura: Hyperoliidae) currently has a disjunct distribution in western Central Africa (Cameroon, Equatorial Guinea, Gabon, and possibly adjacent countries) and the area in and near the Albertine Rift in eastern Democratic Republic of the Congo and neighboring countries. At least two herpetologists have previously suggested that these disjunct populations represent distinct species, and herein, we utilize an integrative taxonomic approach with molecular and morphological data to reconcile the taxonomy of these spiny reed frogs. We sequenced 1554 base pairs of the 16S and RAG1 genes from 34 samples of A. laevis and one sample of A. orophilus (sympatric with eastern populations of A. laevis), and combined these data with previously sequenced GenBank Afrixalus samples via the bioinformatics toolkit SuperCRUNCH. Phylogenetic trees, dated phylogenetic analyses, and species-delimitation analyses were generated with RAxML, BEAST, and BPP, respectively. Eleven mensural characters were taken from multiple specimens of A. laevis and A. orophilus, and compared with paired t-tests and analyses of covariance. These combined results suggested populations of A. laevis in western Central Africa (Cameroon and Bioko Island, Equatorial Guinea) represent one species, whereas populations from the Albertine Rift and nearby forests represent two undescribed taxa that are sister to A. dorsimaculatus. The two new species (A. lacustris sp. nov. and A. phantasma sp. nov.) are distinguished by our phylogenetic and species-delimitation analyses, significant differences in several mensural characters, qualitative morphological differences, and by their non-overlapping elevational distribution.

Abstract1. A 12-month-long survey (April 2013 to March 2014) for Nile crocodiles (Crocodylus niloticus) was conducted along a section of the Victoria Nile/Ramsar site of Murchison Falls National Park, in order to update the historic information on crocodile populations in the area, locating nesting areas, determining seasonality patterns and habitat use, and assess the current abundance and the population size trends since the 1960s. The methods employed included visual encounter surveys, transect counts and opportunistic methods, by using boats. 2. In general, there were diurnal and seasonal fluctuations in the number of crocodile sightings. The crocodile sightings peaked between the months of June and August, with the highest mean number of sightings encountered on any single day being 67 (in July 2013), and the second peak was between January and March with the highest mean of 118 recorded in January 2014. The second peak also coincided with the crocodile breeding season. This clearly shows that the distribution of the sub-population sampled followed a climatic regime. 3. Crocodiles were observed most frequently in water (37%). Grassy banks, islands, river mouths and sandy banks constituted about 47% of the habitats utilised by the crocodile population. Although basking was the most frequent type of activity performed by crocodiles (50%) over the entire survey period, their key activities varied significantly from month to month. Nesting was very visible during the last quarter of the year and the first quarter of the New Year. 4. There was a clear decline of the abundance of crocodiles in this population between 1960s and nowadays. This declining trend was obvious also taking into account the various survey methodologies employed over the decades.

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