bMany pseudomonads produce redox active compounds called phenazines that function in a variety of biological processes. Phenazines are well known for their toxicity against non-phenazine-producing organisms, which allows them to serve as crucial biocontrol agents and virulence factors during infection. As for other secondary metabolites, conditions of nutritional stress or limitation stimulate the production of phenazines, but little is known of the molecular details underlying this phenomenon. Using a combination of microarray and metabolite analyses, we demonstrate that the assimilation of glycine as a carbon source and the biosynthesis of pyocyanin in Pseudomonas aeruginosa PAO1 are both dependent on the PA2449 gene. The inactivation of the PA2449 gene was found to influence the transcription of a core set of genes encoding a glycine cleavage system, serine hydroxymethyltransferase, and serine dehydratase. PA2449 also affected the transcription of several genes that are integral in cell signaling and pyocyanin biosynthesis in P. aeruginosa PAO1. This study sheds light on the unexpected relationship between the utilization of an unfavorable carbon source and the production of pyocyanin. PA2449 is conserved among pseudomonads and might be universally involved in the assimilation of glycine among this metabolically diverse group of bacteria.

The cis-trans isomerization of chemically activated 1-methylallyl is investigated using RRKM/Master Equation methods for a range of pressures and temperatures. This system is a prototype for a large range of allylic radicals formed from highly exothermic (∼35 kcal/mol) OH + alkene reactions. Energies, vibrational frequencies, anharmonic constants, and the torsional potential of the methyl group are computed with density functional theory for both isomers and the transition state connecting them. Chemically activated radicals are found to undergo rapid cis-trans isomerization leading to stabilization of significant amounts of both isomers. In addition, the thermal rate constant for trans → cis isomerization of 1-methylallyl is computed to be high enough to dominate reaction with O(2) in 10 atm of air at 700 K, so models of the chemistry of the (more abundant and more commonly studied) trans-alkenes may need to be modified to include the cis isomers of the corresponding allylic radicals. Addition of molecular oxygen to 1-methylallyl radical can form 2-butene-1-peroxy radical (CH(3)CH═CHCH(2)OO(•)), and quantum chemistry is used to thoroughly explore the possible unimolecular reactions of the cis and trans isomers of this radical. The cis isomer of the 2-butene-1-peroxy radical has the lowest barrier (via 1,6 H-shift) to further reaction, but this barrier appears to be too high to compete with loss of O(2).