Neuropathic pain is the direct result caused by lesions or somatosensory nervous system diseases that are associated with emotional regulation. The incidence of neuropathic pain in the general population is 7-10% and the mechanisms of neuropathic pain are largely unknown. It is often related to structural and functional abnormalities in multiple brain regions. The forebrain, including nucleus accumbens (NAc), medial prefrontal cortex (mPFC) and periaqueductal gray (PAG) have been shown to correspond with the regulation of neuropathic pain. To investigate the molecular mechanism of neuropathic pain across different brain regions, we identified the differentially expressed genes between the spared nerve injury model (SNI) mice of neuropathic pain and the control Sham mice in NAc, mPFC and PAG and mapped these genes onto comprehensive functional association network. With Random Walk with Restart (RWR) analysis, we identified more novel neuropathic pain genes in NAc, mPFC and PAG, such as Asic3, Cd200r1 and MT2, beside well known Capn11 and CYP2E1. What’s more, we discovered their interactions or cross talks. Our results provided novel insights of neuropathic pain and provided therapeutic targets for treating neuropathic pain.

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