We simulate DNA suspension microchannel flows using the dissipative particle dynamics (DPD) method. Two developments make this simulation more realistic. One is to improve the dynamic characteristics of a DPD system by modifying the weighting function of the dissipative force and increasing its cutoff radius, so that the Schmidt number can be increased to a practical level. Another is to set up a wormlike chain model in the DPD framework, according to the measured extension properties of a DNA molecule in uniform flows. This chain model is then used to study flows of a DNA suspension through microchannels. Interesting results on the conformation evolution of DNA molecules passing through the microchannels, including periodic contraction-diffusion microchannels, are reported.
Recent genomewide association studies have found multiple genetic variants on chromosome 8q24 that are significantly associated with an increased susceptibility to prostate, colorectal, and breast cancer. These risk loci are located in a "gene desert," a few hundred kilobases telomeric to the Myc gene. To date, the biological mechanism(s) underlying these associations remain unclear. It has been speculated that these 8q24 genetic variant(s) might affect Myc expression by altering its regulation or amplification status. Here, we show that multiple enhancer elements are present within this region and that they can regulate transcription of Myc. We also demonstrate that one such enhancer element physically interacts with the Myc promoter via transcription factor Tcf-4 binding and acts in an allele specific manner to regulate Myc expression.
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