The burner stabilized stagnation flame technique coupled with micro-orifice probe sampling and mobility sizing has evolved into a useful tool for examining the evolution of the particle size distribution of nascent soot in laminar premixed flames. Several key aspects of this technique are examined through a multi-university collaborative study that involves both experimental measurement and computational modeling. Key issues examined include (a) data reproducibility and facility effects using four burners of different sizes and makers over three different facilities, (b) the mobility diameter and particle mass relationship, and (c) the degree to which the finite orifice flowrate affects the validity of the boundary condition in a pseudo one dimensional stagnation flow flame formulation. The results indicate that different burners across facilities yield nearly identical results after special attention is paid to a range of experimental details, including a proper selection of the sample dilution ratio and quantification of the experimental flame boundary conditions. The mobility size and mass relationship probed by tandem mass and mobility measurement shows that nascent soot with mobility diameter as small as 15 nm can deviate drastically from the spherical shape. Various non-spherical morphology models using a mass density value of 1.5g/cm3 can reconcile this discrepancy in nascent soot mass. Lastly, two-dimensional axisymmetric simulations of the experimental flame with and without the sample orifice flow reveal several problems of the pseudo one-dimensional stagnation flow flame approximation. The impact of the orifice flow on the flame and soot sampled, although small, is not negligible. Specific suggestions are provided as to how to treat the non-ideality of the experimental setup in experiment and model comparisons

The extent and patterns of linkage disequilibrium (LD) determine the feasibility of association studies to map genes that underlie complex traits. Here we present a comparison of the patterns of LD across four major human populations (African-American, Caucasian, Chinese, and Japanese) with a high-resolution single-nucleotide polymorphism (SNP) map covering almost the entire length of chromosomes 6, 21, and 22. We constructed metric LD maps formulated such that the units measure the extent of useful LD for association mapping. LD reaches almost twice as far in chromosome 6 as in chromosomes 21 or 22, in agreement with their differences in recombination rates. By all measures used, out-of-Africa populations showed over a third more LD than African-Americans, highlighting the role of the population's demography in shaping the patterns of LD. Despite those differences, the long-range contour of the LD maps is remarkably similar across the four populations, presumably reflecting common localization of recombination hot spots. Our results have practical implications for the rational design and selection of SNPs for disease association studies.

We examine the quantum confinement in the photoemission ionization energy in air and optical band gap of carbon nanoparticles (CNPs). Premixed, stretched-stabilized ethylene flames are used to generate the CNPs reproducibly over the range of 4-23 nm in volume median diameter. The results reveal that flameformed CNPs behave like an indirect band gap material, and that the existence of the optical band gap is attributed to the highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) gap in the polycyclic aromatic hydrocarbons comprising the CNPs. Both the ionization energy and optical band gap are found to follow closely the quantum confinement effect. The optical band gaps, measured both in situ and ex situ on the CNPs prepared in several additional flames, are consistent with the theory and the baseline data of CNPs from stretched-stabilized ethylene flames, thus indicating the observed effect to be general and that the particle size is the single most important factor governing the variation of the band gap of the CNPs studied. Cyclic voltammetry measurements and density functional theory calculations provide additional support for the quantum dot behavior observed. carbon nanoparticles | quantum dots | flames N anosized carbon grains composed of disordered polycyclic aromatic hydrocarbons (PAHs) are one of the most abundant forms of carbon material in nature (1). As a less-celebrated allotrope of carbon in comparison with fullerenes, nanotubes, and graphene, carbon nanoparticle (CNP) has its share of importance in a wide range of physical phenomena. Studies of interstellar emission spectra suggest that PAH dust grains or CNPs are ubiquitous in the interstellar media (2-5); and they are considered as the tracer of the star formation process (3, 6). CNPs are formed in flames during incomplete combustion. They are part of the soot-formation process. Mature soot or atmospheric black carbon particles often contain both elemental and organic carbon, the relative amounts of which vary by source (7). Soot impacts the global and region climate systems (8, 9) because of its light-absorbing properties (10, 11) and also as cloud condensation nuclei (12). CNPs 10-20 nm in size or fine carbon particles are themselves abundant in diesel exhausts (13). Their light-absorption properties and impact on climate forcing remain poorly characterized (14). As a material, however, CNPs have found their applications in photovoltaic and electrochemical devices, including perovskite solar cells in which flame CNPs act as a hole transfer medium (15).In contrast to the notion that soot, young or mature with respect to its growth in flames, is a broadband light absorber, recent studies have shown that CNPs several nanometers in size have well-defined optical band gaps or band edges (16)(17)(18). The band gap arises from the energy gap between the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) of the constituent PAHs (18,19). While previous studies (16-18) explored the vari...

BackgroundLeaf mold, one of the major diseases of tomato caused by Cladosporium fulvum (C. fulvum), can dramatically reduce the yield and cause multimillion dollar losses annually worldwide. Mapping the resistance genes (R genes) of C. fulvum and devising MAS based strategies for breeding new cultivars is an effective approach to improve the resistance in tomato. Up to now, many C. fulvum genes or QTLs have been mapped using different genetic materials, but few studies focused on Cf-10 gene positioning.ResultsIn this study, we investigated the genetic rules for Cf-10 and used a novel combinatorial strategy to rapidly map the Cf-10 gene. Initially, the performance of F1, F2 and BC1F1 individuals after infection, demonstrated that the resistance against C. fulvum was controlled by a single dominant gene. Two pools of resistant and susceptible individuals from F2 population were investigated, using mapping by sequencing approach and Cf-10 was found to be localized to 3.35 Mb and 3.74 Mb on chromosome 1, employing SNP/InDel index methods, respectively. After accounting for overlapping regions, these two algorithms yielded a total length of 3.29 Mb, narrowing down the target region. We further developed five serviceable KASP markers for this region based on sequencing data and conducted local QTL mapping using individuals from the F2 population, except for mapping by sequencing as mentioned above. Finally Cf-10 gene was mapped spanning a region of 790 kb, where only one gene (Solyc01g007130.3) was annotated as probable receptor protein kinase TMK1 with a LRR motif, a common R gene characteristic. The RT-qPCR analysis further confirmed the localization and the relative expression of Solyc01g007130.3 in Ontario 792 and was found to be significantly higher than that in Moneymaker at 9 dpi and 12 dpi, respectively.ConclusionThis study proposed a novel combinatorial strategy by combining SNP-index, InDel-index analyses and local QTL mapping using KASP genotyping approach to rapidly map genes responsible for specific traits and provided a robust base for cloning the Cf-10 gene. Furthermore, these analyses suggest that Solyc01g007130.3 is a potential candidate to be regarded as Cf-10 gene.Electronic supplementary materialThe online version of this article (10.1186/s12870-018-1616-7) contains supplementary material, which is available to authorized users.

Based on the physiological and RNA-seq analysis, some progress has been made in elucidating the Cf-10-mediated resistance responses to C. fulvum infection in tomato. GO and KEGG enrichment analysis revealed that the DEGs were significantly associated with defense-signaling pathways like oxidation-reduction processes, oxidoreductase activity and plant hormone signal transduction. Leaf mold, caused by the fungus Cladosporium fulvum, is one of the most common diseases affecting tomatoes worldwide. Cf series genes including Cf-2, Cf-4, Cf-5, Cf-9 and Cf-10 play very important roles in resisting tomato leaf mold. Understanding the molecular mechanism of Cf gene-mediated resistance is thus the key to facilitating genetic engineering of resistance to C. fulvum infection. Progress has been made in elucidating two Cf genes, Cf -19 and Cf -12, and how they mediate resistance responses to C. fulvum infection in tomato. However, the mechanism of the Cf-10- mediated resistance response is still unclear. In the present study, RNA-seq was used to analyze changes in the transcriptome at different stages of C. fulvum infection. A total of 2,242 differentially expressed genes (DEGs) responsive to C. fulvum between 0 and 16 days post infection (dpi) were identified, including 1,501 upregulated and 741 downregulated genes. The majority of DEGs were associated with defense-signaling pathways including oxidation-reduction processes, oxidoreductase activity and plant hormone signal transduction. Four DEGs associated with plant-pathogen interaction were uniquely activated in Cf-10 tomato and validated by qRT-PCR. In addition, physiological indicators including reactive oxygen species (ROS), superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) were measured at 0-21 dpi, and hormone expression [Jasmonic acid (JA) and salicylic acid (SA)] was estimated at 0 and 16 dpi to elucidate the mechanism of the Cf-10-mediated resistance response. C. fulvum infection induced the activities of POD, CAT and SOD, and decreased ROS levels. JA was determined to participate in the resistance response to C. fulvum during the initial infection period. The results of this study provide accountable evidence for the physiological and transcriptional regulation of the Cf-10-mediated resistance response to C. fulvum infection, facilitating further understanding of the molecular mechanism of Cf-10-mediated resistance to C. fulvum infection.