Gibbs ensemble Monte Carlo simulations were used to calculate the vapor-liquid and vapor-solid coexistence curves for benzene using two simple united-atom models. An extension of the Gibbs ensemble method that makes use of an elongated box containing a slab of the condensed phase with a vapor phase along one axis was employed for the simulations of the vapor-solid equilibria and the vapor-liquid equilibria at very low reduced temperatures. Configurational-bias and aggregation-volume-bias Monte Carlo techniques were applied to improve the sampling of particle transfers between the two simulation boxes and between the vapor and condensed-phase regions of the elongated box. An isotropic united-atom representation with six Lennard-Jones sites at the positions of the carbon atoms was used for both force fields, but one model contained three additional out-of-plane partial charge sites to explicitly represent benzene's quadrupolar interactions. Both models were fitted to reproduce the critical temperature and density of benzene and yield a fair representation of the vapor-liquid coexistence curve. In contrast, differences between the models are very large for the vapor-solid coexistence curve. In particular, the lack of explicit quadrupolar interactions for the 6-site model greatly reduces the energetic differences between liquid and solid phases, and this model yields a triple point temperature that is about a factor of 2 too low. In contrast, the 9-site model predicts a triple point of benzene at T = 253 +/- 6 K and p = 2.3 +/- 0.8 kPa in satisfactory agreement with the experimental data (T = 278.7 K and p = 4.785 kPa).
β-coronaviruses reshape host cell endomembranes to form double-membrane vesicles (DMVs) for genome replication and transcription. Ectopically expressed viral nonstructural proteins nsp3 and nsp4 interact to zipper and bend the ER for DMV biogenesis. Genome-wide screens revealed the autophagy proteins VMP1 and TMEM41B as important host factors for SARS-CoV-2 infection. Here, we demonstrated that DMV biogenesis, induced by virus infection or expression of nsp3/4, is impaired in the VMP1 KO or TMEM41B KO cells. In VMP1 KO cells, the nsp3/4 complex forms normally, but the zippered ER fails to close into DMVs. In TMEM41B KO cells, the nsp3–nsp4 interaction is reduced and DMV formation is suppressed. Thus, VMP1 and TMEM41B function at different steps during DMV formation. VMP1 was shown to regulate cross-membrane phosphatidylserine (PS) distribution. Inhibiting PS synthesis partially rescues the DMV defects in VMP1 KO cells, suggesting that PS participates in DMV formation. We provide molecular insights into the collaboration of host factors with viral proteins to remodel host organelles.
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