Background Multistate foodborne disease outbreaks and recalls of apples and apple products contaminated with Listeria monocytogenes demonstrate the need for improved pathogen control in the apple supply chain. Apple processing facilities have been identified in the past as potential sources of persisting L . monocytogenes contamination. In this study, we sought to understand the composition of microbiota in built apple and other tree fruit processing environments and its association with the occurrence of the foodborne pathogen L . monocytogenes . Results Analysis of 117 samples collected from three apple and other tree fruit packing facilities (F1, F2, and F3) showed that facility F2 had a significantly higher L . monocytogenes occurrence compared to F1 and F3 ( p < 0.01). The microbiota in facility F2 was distinct compared to facilities F1 and F3 as supported by the mean Shannon index for bacterial and fungal alpha diversities that was significantly lower in F2, compared to F1 and F3 ( p < 0.01). Microbiota in F2 was uniquely predominated by bacterial family Pseudomonadaceae and fungal family Dipodascaceae. Conclusions The composition and diversity of microbiota and mycobiota present in the investigated built food processing environments may be indicative of persistent contamination with L . monocytogenes . These findings support the need for further investigation of the role of the microbial communities in the persistence of L . monocytogenes to support the optimization of L . monocytogenes control strategies in the apple supply chain. Electronic supplementary material The online version of this article (10.1186/s40168-019-0726-2) contains supplementary material, which is available to authorized users.

No abstract

No abstract

No abstract