The recent discovery of numerous DNA N6-methyladenine (6mA) sites has transformed our perception about the roles of 6mA in living organisms. However, our ability to understand them is hampered by our inability to identify 6mA sites rapidly and cost-efficiently by existing experimental methods. Developing a novel method to quickly and accurately identify 6mA sites is critical for speeding up the progress of its function detection and understanding. In this study, we propose a novel computational method, called I-DNAN6mA, to identify 6mA sites and complement experimental methods well, by leveraging the base-pairing rules and a well-designed three-stage deep learning model with pairwise inputs. The performance of our proposed method is benchmarked and evaluated on four species, i.e., Arabidopsis thaliana, Drosophila melanogaster, Rice, and Rosaceae. The experimental results demonstrate that I-DNAN6mA achieves area under the receiver operating characteristic curve values of 0.967, 0.963, 0.947, 0.976, and 0.990, accuracies of 91.5, 92.7, 88.2, 0.938, and 96.2%, and Mathew’s correlation coefficient values of 0.855, 0.831, 0.763, 0.877, and 0.924 on five benchmark data sets, respectively, and outperforms several existing state-of-the-art methods. To our knowledge, I-DNAN6mA is the first approach to identify 6mA sites using a novel image-like representation of DNA sequences and a deep learning model with pairwise inputs. I-DNAN6mA is expected to be useful for locating functional regions of DNA.

Imaging through scattering media faces great challenges. Object information will be seriously degraded by scattering media, and the final imaging quality will be poor. In order to improve imaging quality, we propose using the transmitting characteristics of an object’s polarization information, to achieve imaging through scattering media under natural light using an improved U-net. In this paper, we choose ground glass as the scattering medium and capture the polarization images of targets through the scattering medium by a polarization camera. Experimental results show that the proposed model can reconstruct target information from highly damaged images, and for the same material object, the trained network model has a superior generalization without considering its structural shapes. Meanwhile, we have also investigated the effect of the distance between the target and the ground glass on the reconstructing performance, in which, and although the mismatch distance between the training set and the testing sample expands to 1 cm, the modified U-net can also efficaciously reconstruct the targets.

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Polarization imaging has outstanding advantages in the field of scattering imaging, which still encounters great challenges in heavy scattering media systems even though there are helps from deep learning technology. In this paper, we propose a self-attention module (SAM) in multi-scale improved U-net (SAM-MIU-net) for the polarization scattering imaging, which can extract a new combination of multidimensional information from targets effectively. The proposed SAM-MIU-net can focus on the stable feature carried by polarization characteristics of the target, so as to enhance the expression of the available features, and make it easier to extract polarization features which help to recover the detail of targets for the polarization scattering imaging. Meanwhile, the SAM’s effectiveness has been verified in a series of experiments. Based on proposed SAM-MIU-net, we have investigated the generalization abilities for the targets’ structures and materials, and the imaging distances between the targets and the ground glass. Experimental results demonstrate that our proposed SAM-MIU-net can achieve high-precision reconstruction of target information under incoherent light conditions for the polarization scattering imaging.

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