Premise Glyptostrobus pensilis (Cupressaceae) is a critically endangered conifer native to China, Laos, and Vietnam, with only a few populations remaining in the wild. Methods and Results Using a complete chloroplast genome sequence, we designed 70 cp SSR loci and tested them for amplification success and polymorphism in 16 samples. Ten loci were found to be polymorphic and their genetic diversity was characterized using a total of 83 individuals from three populations in China. A total of 43 haplotypes were present, the effective number of haplotypes varied from 4.55 to 13.36, and the haplotypic richness ranged from 8.04 to 16.00. Gene diversity ranged from 0.81 to 0.97 (average 0.89). The number of alleles per locus and population ranged from one to eight, and the effective number of alleles ranged from 1.00 to 3.90. All polymorphic loci were successfully amplified in the related species Cryptomeria japonica var. sinensis , Taxodium distichum , T. ascendens , and Cunninghamia lanceolata . Conclusions These newly developed chloroplast microsatellites will be useful for population genetic and phylogeographic analyses of G. pensilis and related species.

Climate change affects the species spatio‐temporal distribution deeply. However, how climate affects the spatio‐temporal distribution pattern of related species on the large scale remains largely unclear. Here, we selected two closely related species in Taxus genus Taxus chinensis and Taxus mairei to explore their distribution pattern. Four environmental variables were employed to simulate the distribution patterns using the optimized Maxent model. The results showed that the highly suitable area of T. chinensis and T. mairei in current period was 1.616 × 105 km2 and 3.093 × 105 km2, respectively. The distribution area of T. chinensis was smaller than that of T. mairei in different periods. Comparison of different periods shown that the distribution area of the two species was almost in stasis from LIG to the future periods. Temperature and precipitation were the main climate factors that determined the potential distribution of the two species. The centroids of T. chinensis and T. mairei were in Sichuan and Hunan provinces in current period, respectively. In the future, the centroid migration direction of the two species would shift towards northeast. Our results revealed that the average elevation distribution of T. chinensis was higher than that of T. mairei. This study sheds new insights into the habitat preference and limiting environment factors of the two related species and provides a valuable reference for the conservation of these two threatened species.

Climate change affects the species spatio-temporal distribution deeply. However, how climate affects the spatio-temporal distribution pattern of related species on the large scale remains largely unclear. Here, we selected two closely related species in Taxus genus Taxus chinensis and Taxus mairei to explore their distribution pattern. Four environmental variables were employed to simulate the distribution patterns using the optimized Maxent model. The results showed that the highly suitable area of T. chinensis and T. mairei in current period was 1.964×105km2 and 3.074×105km2, respectively. The distribution area of T. chinensis was smaller than that of T. mairei in different periods. Temperature and precipitation were the main climate factors that determined the potential distribution of the two species. The centroids of T. chinensis and T. mairei were in Sichuan and Hunan province in current period, respectively. In the future, the centroid migration direction of two species was almost opposite. T. chinensis would shift towards southwest, while T. mairei towards northeast. Our results revealed that the average elevation distribution of T. chinensis was higher than that of T. mairei. This study sheds new insights into the habitat preference and limiting environment factors of the two related species and provides a valuable reference for the conservation of these two endangered species.

The tree Cryptomeria japonica var. sinensis is native to China and is an important forest species widely used for wood production. Here, we sequenced the complete chloroplast (cp) genomes of six wild and six cultivated accessions of this tree. The 12 cp genomes ranged from 131,379 to 131,528 bp. The GC content was 35.4%, similar to other gymnosperm species. The cp genomes lacked typical inverted repeat (IR) regions and encoded 118 genes. Most genes appeared in one copy and 17 genes contained introns. Two multi-copy genes (trnM-CAU × 3, trnQ-UUG × 2) were identified. And 59-61 simple sequence repeats (SSRs) were identified in the whole cp genomes, and most SSR loci consisted of A or T bases. Phylogenetic analysis indicated that wild and cultivated accessions were not clearly differentiated. Our results will provide useful information for the conservation and utilization of this variety.

Climate change is considered to affect the species distribution deeply in time and space. Knowledge of how plant distribution responded to climate change may help us know their evolutionary history and predict ongoing environmental changes. Elevational range shifts of species in response to climate change is a common phenomenon in mountains, especially for the closely related species in sympatric. Here, we selected Taxus chinensis and Taxus mairei to explore this issue. Four types of environmental variables were used to simulate the distribution patterns, under the historical climate and future climate change scenarios, with the optimization Maxent model. We found that elevational distribution of two species has significant differences. The distribution of T. chinensis was higher than that of T. mairei. The centroid of T. chinensis and T. mairei were in Sichuan and Hunan province, respectively. Temperature and precipitation were the main factors that determine the potential distribution of the two species, and the suitable distribution area of T. chinensis was lower than T. mairei. In the future, the direction of centroid migration of two species was almost opposite, T. chinensis will shift southwest while T. mairei go northeast. Our results not only provided an insight to discriminate two sympatric species in subtropical and warm temperature zones, but also gave us an important reference for the conservation of these valuable endangered species.