Cancer immunotherapy by targeting of immune checkpoint molecules has been a research ‘hot-spot' in recent years. Nivolumab, a human monoclonal antibody targeting PD-1, has been widely used clinically since 2014. However, the binding mechanism of nivolumab to PD-1 has not yet been shown, despite a recent report describing the complex structure of pembrolizumab/PD-1. It has previously been speculated that PD-1 glycosylation is involved in nivolumab recognition. Here we report the complex structure of nivolumab with PD-1 and evaluate the effects of PD-1 N-glycosylation on the interactions with nivolumab. Structural and functional analyses unexpectedly reveal an N-terminal loop outside the IgV domain of PD-1. This loop is not involved in recognition of PD-L1 but dominates binding to nivolumab, whereas N-glycosylation is not involved in binding at all. Nivolumab binds to a completely different area than pembrolizumab. These results provide the basis for the design of future inhibitory molecules targeting PD-1.

Severe fever with thrombocytopenia syndrome virus (SFTSV) and Rift Valley fever virus (RVFV) are two arthropod-borne phleboviruses in the Bunyaviridae family, which cause severe illness in humans and animals. Glycoprotein N (Gn) is one of the envelope proteins on the virus surface and is a major antigenic component. Despite its importance for virus entry and fusion, the molecular features of the phleboviruse Gn were unknown. Here, we present the crystal structures of the Gn head domain from both SFTSV and RVFV, which display a similar compact triangular shape overall, while the three subdomains (domains I, II, and III) making up the Gn head display different arrangements. Ten cysteines in the Gn stem region are conserved among phleboviruses, four of which are responsible for Gn dimerization, as revealed in this study, and they are highly conserved for all members in Bunyaviridae. Therefore, we propose an anchoring mode on the viral surface. The complex structure of the SFTSV Gn head and human neutralizing antibody MAb 4-5 reveals that helices α6 in subdomain III is the key component for neutralization. Importantly, the structure indicates that domain III is an ideal region recognized by specific neutralizing antibodies, while domain II is probably recognized by broadly neutralizing antibodies. Collectively, Gn is a desirable vaccine target, and our data provide a molecular basis for the rational design of vaccines against the diseases caused by phleboviruses and a model for bunyavirus Gn embedding on the viral surface.bunyavirus | SFTSV | glycoprotein | neutralizing antibody | RVFV

Monoclonal antibodies (mAbs) blocking immune checkpoint molecules, especially programmed cell death 1 (PD-1) and its ligands programmed cell death 1 ligand 1 (PD-L1) and ligand 2 (PD-L2), are currently been investigated for treatment of various tumors [1-3]. PD-L1 and PD-L2 are usually upregulated on the surface of multiple tumor cells to mediate immune tolerance through the interaction with inhibitory PD-1 molecule [4]. Thus, blocking PD-1/PD-Ls interaction has brought promising future for tumor immunotherapy. To date, several PD-1/ PD-L1 blockade antibodies have been approved for clinical use or under phase III clinical trials (e.g., nivolumab, pembrolizumab, atezolizumab, avelumab, durvalumab and BMS-936559, etc.) [4]. The PD-1 targeting therapeutic antibodies block the PD-1/PD-L1 or PD-1/PD-L2 interaction to restore tumor-specific T cell reactivity, without mediating antibody-dependent cell-mediated cytotoxicity (ADCC). Recently, the structural basis of hPD-1/pembrolizumab (a PD-1 targeting therapeutic antibody developed by Merck & Co., Inc., USA) has been revealed, providing a molecular insight into blocking PD-1-mediated immune suppression by antibody [5]. PD-L1 targeting therapeutic antibodies possess PD-1/ PD-L1 blockade activity with or without ADCC activity. As one of the PD-L1 targeting antibodies, avelumab is a human IgG1 antibody with ADCC activity developed by Merck (Darmstadt, Germany) and Pfizer, which is now in multiple phase III clinical trials against non-small cell lung cancer (NCT02395172), advanced renal cell cancer (NCT02684006) and gastric cancer (NCT02625610) [6]. The crystal structures of PD-L1 couplexed with its receptor PD-1 have been extensively studied, including human PD-L1 (hPD-L1) alone, mouse PD-1 (mPD-1) complexed with hPD-L1 and human PD-1 (hPD-1) complexed with hPD-L1 [7-9]. Though the complex structure of hPD-1 with a commercial mAb pembrolizumab has been solved very recently [5], hPD-L1/mAb complex structure has not been investigated. In this study, we expressed the single chain Fv frag