Background Trait-based approaches have been used to demonstrate the responses of plant functional traits to environmental change may manifest both among- and/or within-species. However, how community-level foliar stoichiometric characteristic variations respond to aridity and salinity is still not well-known. Methods We calculated community weighted means (CWMs) and non-weighted means (CMs) of foliar C, N, and P concentrations (and their ratios) in a dryland plant community respond to high (HSW) and low soil moisture and salinity (LSW). Based on a sum of squares decomposition method, we determined the relative contributions of intraspecific variation and species turnover in both HSW and LSW habitats. Results The CWMs of foliar C, C:N and C:P, and CM of N in the HSW habitat were significantly greater than those in the LSW habitat. The trait variations in two habitats were mainly driven by intraspecific variation, and its contribution to trait variation mostly declined with the decrease of soil moisture and salinity. The CWMs of foliar C-related stoichiometric characteristics were mainly dominated by species turnover in both habitats. Moreover, the contribution of species turnover to C and C:P variations showed an increasing trend in the LSW habitat. For CWMs, negative covariations between intraspecific variation and turnover occurred in HSW and positive covariations (except N:P) occurred in LSW; however, CMs were generally positively correlated in both habitats. Conclusions The intraspecific variation declined as drought stress intensified, which indicates that the adaptability of desert plants declined when the stress changed from salinity to aridity. The total variation of C-related traits in both habitats were mainly dominated by species turnover. These findings highlight the importance of intraspecific variation in driving desert plant response of community functional composition to salt stress, and the joint role of intraspecific variation and species turnover in resisting drought stress.