[1] The effect of the geostrophic stirring on phytoplankton variability during the northeast Atlantic spring bloom is studied by analyzing satellite derived surface chlorophyll, sea surface temperature, and sea surface height. The calculation of unstable manifolds is used as a diagnostic of the transport properties of the geostrophic velocity field (calculated from the sea surface height). We identify two mechanisms by which the geostrophic velocity field acts on chlorophyll patterns. The first mechanism is a direct effect of the horizontal transport on already formed chlorophyll. By acting as ''sticking'' transport barriers, the unstable manifolds are shown to (1) modulate the fronts of already formed phytoplankton in lobular structures, (2) create spiralling chlorophyll anomalies within eddies, and (3) produce chlorophyll filaments. The second mechanism is an indirect effect on in situ chlorophyll production mediated by nutrient upwelling. Supported by a recent study on the vertical velocities of the northeast Atlantic (Legal et al., 2006), we argue that the horizontal unstable manifolds also shape the filamentary, vertical velocity cells, and hence the patterns of in situ produced chlorophyll through submesoscale vertical nutrient injection.

Marine phytoplankton account for approximately half of global primary productivity , making their fate an important driver of the marine carbon cycle. Viruses are thought to recycle more than one-quarter of oceanic photosynthetically fixed organic carbon , which can stimulate nutrient regeneration, primary production and upper ocean respiration via lytic infection and the 'virus shunt'. Ultimately, this limits the trophic transfer of carbon and energy to both higher food webs and the deep ocean . Using imagery taken by the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard the Aqua satellite, along with a suite of diagnostic lipid- and gene-based molecular biomarkers, in situ optical sensors and sediment traps, we show that Coccolithovirus infections of mesoscale (~100 km) Emiliania huxleyi blooms in the North Atlantic are coupled with particle aggregation, high zooplankton grazing and greater downward vertical fluxes of both particulate organic and particulate inorganic carbon from the upper mixed layer. Our analyses captured blooms in different phases of infection (early, late and post) and revealed the highest export flux in 'early-infected blooms' with sinking particles being disproportionately enriched with infected cells and subsequently remineralized at depth in the mesopelagic. Our findings reveal viral infection as a previously unrecognized ecosystem process enhancing biological pump efficiency.

Phytoplankton blooms are ephemeral events of exceptionally high primary productivity that regulate the flux of carbon across marine food webs [1-3]. Quantification of bloom turnover [4] is limited by a fundamental difficulty to decouple between physical and biological processes as observed by ocean color satellite data. This limitation hinders the quantification of bloom demise and its regulation by biological processes [5, 6], which has important consequences on the efficiency of the biological pump of carbon to the deep ocean [7-9]. Here, we address this challenge and quantify algal blooms' turnover using a combination of satellite and in situ data, which allows identification of a relatively stable oceanic patch that is subject to little mixing with its surroundings. Using a newly developed multisatellite Lagrangian diagnostic, we decouple the contributions of physical and biological processes, allowing quantification of a complete life cycle of a mesoscale (∼10-100 km) bloom of coccolithophores in the North Atlantic, from exponential growth to its rapid demise. We estimate the amount of organic carbon produced during the bloom to be in the order of 24,000 tons, of which two-thirds were turned over within 1 week. Complimentary in situ measurements of the same patch area revealed high levels of specific viruses infecting coccolithophore cells, therefore pointing at the importance of viral infection as a possible mortality agent. Application of the newly developed satellite-based approaches opens the way for large-scale quantification of the impact of diverse environmental stresses on the fate of phytoplankton blooms and derived carbon in the ocean.

International audienceUsing satellite retrievals of sea surface chlorophyll and geostrophic currents we study the evolution of a distinct chlorophyll patch transported by an Agulhas ring along a ˜1,500 km track. Throughout an ˜11 months period of the total 2 years eddy lifetime, the shape of the chlorophyll patch is consistently delimited by the horizontal transport barriers associated with the eddy. Analysis of Lagrangian time series of sea surface variables in and around the eddy suggests that the evolution of the chlorophyll patch is driven by two processes (i) slow lateral mixing with ambient waters mediated by horizontal stirring in filaments, and (ii) rapid events of wind induced vertical mixing. These results support the idea that mesoscale eddies shape biological production through the combination of horizontal and vertical dynamical processes, and emphasize the important role of horizontal eddy transport in sustaining biological production over the otherwise nutrient-depleted subtropical gyres