Two asymmetric ligands, 2-(3-pyridyl)benzimidazole (3-PyBim) and 2-(4-pyridyl)benzimidazole (4-PyBim) which are positional isomers and versatile to provide both coordination donors (NPy and NBim) and hydrogen bonding sites (NBim and HNBim), were utilized to synthesize a series of transition metal complexes, namely [Ag2(3-PyBim)2](X)2 (X = BF4
– (1), NO3
– (2), ClO4
– (3), CF3SO3
– (4)), [Ag(4-PyBim)](NO3)·(H2O) (5), [Cu(3-PyBim)2(H2O)2](ClO4)2 (6), [Co(3-PyBim)2(H2O)4](NO3)2·(H2O)4(7), [Cu(4-PyBim)2(Cl)2](H2O)2 (8), [Zn(4-PyBim)2(H2O)2(NO3)2] (9), and [Cu2(3-PyBim)2(OAc)4] (10). These simple complexes show diversified intermolecular interaction modes and can behave as basic structural units to be assembled into higher dimensional structures via dimension increasing. In complexes 1–4, every two Ag (I) atoms are connected by two 3-PyBim ligands to form a discrete [Ag2(PyBim)2]2+ cyclic unit, while in complex 5, Ag (I) atoms are bridged by 4-PyBim ligands into a one-dimensional “zigzag” chain. This is due to positional isomerization of the ligands 3-PyBim and 4-PyBim, but they both display the similar end-to-end coordination mode. In contrast, these two ligands show the end-on coordination mode in complexes 6–9 with the Cu (II), Co (II), or Zn (II) ions taking on square or octahedral coordination geometries to form monomeric structural units containing one metal and two ligands, as well as additional water molecules or counteranions wherever necessary. In complex 10, the well-known dimetal paddle-wheel motif is formed with two Cu (II) ions adopting a square pyramidal geometry, but the two 3-PyBim ligands also take the same end-on coordination mode as that in complexes 6–9. The different coordination modes of the ligands in together with the influences from the counteranions play essential roles to propagate these basic structural units into 1D (1, 10), 2D (2–6, 8), or 3D (7, 9) frameworks via hydrogen bonding and other weak interactions. Thermogravimetric properties of some complexes were also measured.