Background and Objective: Detecting urine red blood cells (U-RBCs) is an important operation in diagnosing nephropathy. Existing U-RBC detection methods usually employ single-focus images to implement such tasks, which inevitably results in false positives and missed detections due to the abundance of defocused U-RBCs in the single-focus images. Meanwhile, the current diabetic nephropathy diagnosis methods heavily rely on artificially setting a threshold to detect the U-RBC proportion, whose accuracy and robustness are still supposed to be improved. Methods: To overcome these limitations, a novel multi-focus video dataset in which the typical shape of all U-RBCs can be captured in one frame is constructed, and an accurate U-RBC detection method based on multi-focus video fusion (D-MVF) is presented. The proposed D-MVF method consists of multi-focus video fusion and detection stages. In the fusion stage, D-MVF first uses the frame-difference data of multi-focus video to separate the U-RBCs from the background. Then, a new key frame extraction method based on the three metrics of information entropy, edge gradient, and intensity contrast is proposed. This method is responsible for extracting the typical shapes of U-RBCs and fusing them into a single image. In the detection stage, D-MVF utilizes the high-performance deep learning model YOLOv4 to rapidly and accurately detect U-RBCs based on the fused image. In addition, based on U-RBC detection results from D-MVF, this paper applies the K-nearest neighbor (KNN) method to replace artificial threshold setting for achieving more accurate diabetic nephropathy diagnosis. Results: A series of controlled experiments are conducted on the self-constructed dataset containing 887 multi-focus videos, and the experimental results show that the proposed D-MVF obtains a satisfactory mean average precision (mAP) of 0.915, which is significantly higher than that of the existing method based on single-focus images (0.700). Meanwhile, the diabetic nephropathy diagnosis accuracy and specificity of KNN reach 0.781 and 0.793, respectively, which significantly exceed the traditional threshold method (0.719 and 0.759). Conclusions: The research in this paper intelligently assists microscopists to complete U-RBC detection and diabetic nephropathy diagnosis. Therefore, the work load of microscopists can be effectively relieved, and the urine test demands of nephrotic patients can be met.
In the diagnosis of chronic kidney disease, glomerulus as the blood filter provides important information for an accurate disease diagnosis. Thus automatic localization of the glomeruli is the necessary groundwork for future auxiliary kidney disease diagnosis, such as glomerular classification and area measurement. In this paper, we propose an efficient glomerular object locator in kidney whole slide image(WSI) based on proposal-free network and dynamic scale evaluation method. In the training phase, we construct an intensive proposal-free network which can learn efficiently the fine-grained features of the glomerulus. In the evaluation phase, a dynamic scale evaluation method is utilized to help the well-trained model find the most appropriate evaluation scale for each high-resolution WSI. We collect and digitalize 1204 renal biopsy microscope slides containing more than 41000 annotated glomeruli, which is the largest number of dataset to our best knowledge. We validate the each component of the proposed locator via the ablation study. Experimental results confirm that the proposed locator outperforms recently proposed approaches and pathologists by comparing F 1 and run time in localizing glomeruli from WSIs at a resolution of 0.25 μm/pixel and thus achieves state-of-the-art performance. Particularly, the proposed locator can be embedded into the renal intelligent auxiliary diagnosis system for renal clinical diagnosis by localizing glomeruli in high-resolution WSIs effectively.
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