The
crystal structure of polydiacetylene giant single crystal has
been analyzed on the basis of the two different methods of wide-angle
neutron diffraction and X-ray diffraction. The X-ray result gives
us the total electron density distribution [ρ(x)] of polymer chain. The neutron result tells the positions
of atomic nuclei, which can allow us to speculate the electron density
distributions [ρ
0(x)] around
the nonbonded isolated atoms. As a result, the so-called bonded (or
deformed) electron density Δρ(x) [≡
ρ(x) – ρ0(x) = ρX(x) – ρN(x)], i.e., the electron density distribution due to
the conjugation among the covalently bonded atoms along the polymer
chain, can be estimated using the two information obtained by the
X-ray and neutron data analyses (the so-called X-ray–neutron
subtraction (X–N) method). The present report
is the first example of the application of X–N method to the
synthetic polymer species. The Δρ(x) derived
for polydiacetylene was found similar to that of the low-molecular-weight
model compound having the similar electronically conjugated chemical
formula. The Δρ(x) was calculated by the
density functional theory, which was in a good agreement with the
experimental result qualitatively.
In order to elucidate the intermolecular interactions involved in complex formation of chitosan with hydrogen halides, crystal structures of chitosan complexes with HBr and HI were analyzed based on synchrotron X-ray fiber diffraction data (BL40B2, SPring-8, Hyogo, Japan). Both crystals are isomorphous and belong to the monoclinic space group P21. The unit cell constants are a = 9.299(9), b = 9.504(8), c(fiber axis) = 10.41(1) Å and beta = 106.93(8) deg, and a = 9.46(2), b = 9.79(2), c(fiber axis) = 10.33(2) Å and beta = 105.1(2) deg for HBr and HI complexes, respectively. The final packing models were obtained by the linked-atom least-squares refinement, which gave R-factors of 0.192 for HBr complex (93 observed spots) and 0.193 for HI complex (44 observed spots). The halide ions are aligned along the c-axis at intervals of about 5Å and are surrounded by four polymer chains. In an asymmetric unit, there are two halide ions. One ion accepts three hydrogen bonds from NH3 + groups (N2 nitrogen). The other one participates in one hydrogen bond from N2 and two hydrogen bonds from primary hydroxyl groups (O6 oxygen). In addition, the chitosan chains are linked by N-H...O and C-H...O hydrogen bonds along the b-axis direction. The crystal structure of the hydrated form of chitosan was reanalyzed using synchrotron X-ray fiber diffraction data (BL38B1, SPring-8). The chitosan chains make sheet structures parallel to the bc-plane and these sheets stack along the a-axis. Water molecules form columns between these sheets. The sites of the halide ions in the complex crystals are similar to those of the water molecules in the hydrated form. It was suggested that the columnar structure of water in the hydrated form plays an important role for the complex formation.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.