Response of biological communities to environmental stresses is a critical issue in ecology, but how microbial communities shift across heavy metal gradients remain unclear. To explore the microbial response to heavy metal contamination (e.g., Cr, Mn, Zn), the composition, structure and functional potential of sedimentary microbial community were investigated by sequencing of 16S rRNA gene amplicons and a functional gene microarray. Analysis of 16S rRNA sequences revealed that the composition and structure of sedimentary microbial communities changed significantly across a gradient of heavy metal contamination, and the relative abundances were higher for Firmicutes, Chloroflexi and Crenarchaeota, but lower for Proteobacteria and Actinobacteria in highly contaminated samples. Also, molecular ecological network analysis of sequencing data indicated that their possible interactions might be enhanced in highly contaminated communities. Correspondently, key functional genes involved in metal homeostasis (e.g., chrR, metC, merB), carbon metabolism, and organic remediation showed a higher abundance in highly contaminated samples, indicating that bacterial communities in contaminated areas may modulate their energy consumption and organic remediation ability. This study indicated that the sedimentary indigenous microbial community may shift the composition and structure as well as function priority and interaction network to increase their adaptability and/or resistance to environmental contamination.

To define the molecular response of Acidithiobacillus ferrooxidans under pH up-shift, temporal gene expression profiles were examined by using whole-genome DNA microarrays for A. ferrooxidans. Approximately 30% of the 3,132 genes represented on the microarray were significantly upregulated over a 160-min period, while about 14% were significantly downregulated. Our results revealed that A. ferrooxidans showed potential self-protection and self-regulation performance in response to pH up-shift stress. Many genes involved in regulation of membrane components were differentially expressed under the pH up-shift stress. Likewise, most of genes involved in phosphate metabolism, sulfur assimilation, and CO(2) fixation were obviously induced. Conversely, the transcription of a polyphosphate kinase gene (AFE1210) associated with phosphate storage was significantly repressed, which probably stemmed from the depletion of polyphosphate. Besides, most of the genes involved in hydrogen uptake were significantly induced, whereas many genes involved in nitrogen fixation were obviously repressed, which suggested that hydrogen uptake and nitrogen fixation could contribute to cytoplasmic pH homeostasis.

Chopped pepper, a traditionally fermented condiment product in China, is widely consumed because of its good flavor. However, large amounts of byproduct, namely, chopped pepper seeds (CPS) are produced annually during the manufacture of chopped pepper product, and this material is generally classified as solid waste, which causes waste of resource. In this work, the total phenolics (TPC) and capsaicinoids content, antioxidant property, and αglucosidase inhibitory activity (GIA) of three varieties CPS (i.e., WPS, LPS, and BRPS) were assessed. The effects of solvents with different polarities, including 80% methanol, 80% acetone, and 80% ethanol, in extracting the bioactive compounds were also investigated. The results indicated that the studied CPS were rich in total phenolics and capsaicinoids with contents of 3,934-6,208 μg GAE/g dw and 1,052-3,692 μg/g dw, respectively. Three capsaicinoid compounds, namely, capsaicin, dihydrocapsaicin, and nordihydrocapsaicin, in the CPS were identified and quantified by HPLC. All CPS samples exhibited potent antioxidant property and GIA. Moreover, the different extraction solvents exhibited considerable influence on TPC, capsaicinoid content, antioxidant capacity, and GIA. Regardless of different polarities extraction solvents, BRPS had the highest level of phenolics, capsaicin, dihydrocapsaicin and nordihydrocapsaicin and exhibited the strongest antioxidant activity and GIA among the three varieties CPS studied. In practical applications, the use of 80% ethanol is recommended for the extraction of bioactive compounds from BRPS, because it is environment friendly. Positive correlations between phenolics, capsaicinoids, antioxidant activity, and GIA were observed by PCA and linear correlation analysis. Thus, CPS, especially BRPS, is abundant and can be a cheap source of natural antioxidants and anti-diabetic compounds, making it an interesting ingredient in the potential future development of nutraceuticals or functional food products and bringing great advantages for food and pharmaceutical industries, consumers, and producers.