Protein-protein interactions form the proteinaceous network, which plays a central role in numerous processes in the cell. This review highlights the main structures, properties of contact surfaces, and forces involved in protein-protein interactions. The properties of protein contact surfaces depend on their functions. The characteristics of contact surfaces of short-lived protein complexes share some similarities with the active sites of enzymes. The contact surfaces of permanent complexes resemble domain contacts or the protein core. It is reasonable to consider protein-protein complex formation as a continuation of protein folding. The contact surfaces of the protein complexes have unique structure and properties, so they represent prospective targets for a new generation of drugs. During the last decade, numerous investigations have been undertaken to find or design small molecules that block protein dimerization or protein(peptide)-receptor interaction, or on the other hand, induce protein dimerization.

In the present study, we demonstrate atomic force microscopy (AFM)-based detection of hepatitis C virus (HCV) particles in serum samples using a chip with aptamer-functionalized surface (apta-based AFM chip). The target particles, containing core antigen of HCV (HCVcoreAg protein), were biospecifically captured onto the chip surface from 1 mL of test solution containing 10 µL of serum collected from a hepatitis C patient. The registration of aptamer/antigen complexes on the chip surface was performed by AFM. The aptamers used in the present study were initially developed for therapeutic purposes; herein, these aptamers have been successfully utilized as probe molecules for HCVcoreAg detection in the presence of a complex protein matrix (human serum). The results obtained herein can be used for the development of detection systems that employ affine enrichment for protein detection.

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The properties of silicon-on-insulator nanowires (SOI NWs) fabricated by means of electron lithography and gas etching of SOI in XeF 2 or SF 6 :CFCl 3 have been investigated. The method used to fabricate the nanowires was found to require no additional anneal to be given to the final structure for defect removal after nanostructuring. The sensitivity of SOI NWs to negative protein BSA molecules in the pH 7.4 buffer solution was shown to be as high as 1 femtomoles. The gate characteristics of SOI NWs were used to determine the charge density of particles adsorbed on the NW surface. A charge density of 4.6 × 10 11 cm −2 was estimated for a 1 femtomole protein concentration. The combined use of open-channel structures with top gates was employed for determining the charge state of structure surfaces after different chemical treatments. Chemical treatments giving rise to a density of the negative charges on the surface of NWs ranging in the interval (7-23) × 10 11 cm −2 were examined. Treatments in methanol (after removal of the native oxide) were found to provide stabilization of the SOI surface over a 3-h interval after the treatments.

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