Since the emergence of SARS-CoV-2, five different variants of concern (VOCs) have been identified: Alpha, Beta, Gamma, Delta, and Omicron. Because of confounding factors in the human population, such as preexisting immunity, comparing severity of disease caused by different VOCs is challenging. Here, we investigate disease progression in the rhesus macaque model upon inoculation with the Delta, Omicron BA.1, and Omicron BA.2 VOCs. Disease severity in rhesus macaques inoculated with Omicron BA.1 or BA.2 was lower than those inoculated with Delta and resulted in significantly lower viral loads in nasal swabs, bronchial cytology brush samples, and lung tissue in rhesus macaques. Cytokines and chemokines were up-regulated in nasosorption samples of Delta animals compared to Omicron BA.1 and BA.2 animals. Overall, these data suggest that, in rhesus macaques, Omicron replicates to lower levels than the Delta VOC, resulting in reduced clinical disease.

Light pollution contributes to the degradation and reduction of habitat for wildlife. Nocturnally nesting and hatching sea turtle species are particularly sensitive to artificial light near nesting beaches. At local scales (0.01-0.1 km), artificial light has been experimentally shown to deter nesting females and disorient hatchlings. This study used satellite-based remote sensing to assess broad scale (~1-100s km) effects of artificial light on nesting patterns of loggerhead (Caretta caretta), leatherback (Dermochelys coriacea) and green turtles (Chelonia mydas) along the Florida coastline. Annual artificial nightlight data from 1992 to 2012 acquired by the Defense Meteorological Satellite Program (DMSP) were compared to an extensive nesting dataset for 368,~1 km beach segments from this same 21-year period. Relationships between nest densities and artificial lighting were derived using simultaneous autoregressive models to adjust for the presence of spatial autocorrelation. Though coastal urbanization increased in Florida during this period, nearly two-thirds of the surveyed beaches exhibited decreasing light levels (N = 249); only a small fraction of the beaches showed significant increases (N = 52). Nest densities for all three sea turtle species were negatively influenced by artificial light at neighborhood scales (<100 km); however, only loggerhead and green turtle nest densities were influenced by artificial light levels at the individual beach scale (~1 km). Satellite monitoring shows promise for light management of extensive or remote areas. As the spectral, spatial, and temporal resolutions of the satellite data are coarse, ground measurements are suggested to confirm that artificial light levels on beaches during the nesting season correspond to the annual nightlight measures.

The emergence of SARS-CoV-2 in the human population and the resulting COVID-19 pandemic have led to the development of various diagnostic tests. The OraSure InteliSwab™ COVID-19 Rapid Test is a recently developed and FDA emergency use-authorized rapid antigen-detecting test that functions as a lateral flow device targeting the nucleocapsid protein. Due to SARS-CoV-2 evolution, there is a need to evaluate the sensitivity of rapid antigen-detecting tests for new variants, especially variants of concern such as Omicron. In this study, the sensitivity of the OraSure InteliSwab™ Test was investigated using cultured strains of the known variants of concern (VOCs, Alpha, Beta, Gamma, Delta, and Omicron) and the ancestral lineage (lineage A). Based on dilution series in cell culture medium, an approximate limit of detection for each variant was determined. The OraSure InteliSwab™ Test showed an overall comparable performance using recombinant nucleocapsid protein and different cultured variants, with recorded limits of detection ranging between 3.77 × 105 and 9.13 × 105 RNA copies/mL. Finally, the sensitivity was evaluated using oropharyngeal swabs from Syrian golden hamsters inoculated with the six VOCs. Ultimately, the OraSure InteliSwab™ COVID-19 Rapid Test showed no decrease in sensitivity between the ancestral SARS-CoV-2 strain and any VOCs including Omicron.

Omicron has demonstrated a competitive advantage over Delta in vaccinated people. To understand this, we designed a transmission chain experiment using naive, intranasally (IN) or intramuscularly (IM) vaccinated, and previously infected (PI) hamsters. Vaccination and previous infection protected animals from disease and virus replication after Delta and Omicron dual challenge. A gradient in transmission blockage was observed: IM vaccination displayed moderate transmission blockage potential over three airborne chains (approx. 70%), whereas, IN vaccination and PI blocked airborne transmission in >90%. In naive hamsters, Delta completely outcompeted Omicron within and between hosts after dual infection in onward transmission. Although Delta also outcompeted Omicron in the vaccinated and PI transmission chains, an increase in Omicron competitiveness was observed in these groups. This correlated with the increase in the strength of the humoral response against Delta, with the strongest response seen in PI animals. These data highlight the continuous need to assess the emergence and spread of novel variants in populations with pre-existing immunity and address the additional evolutionary pressure this may exert on the virus.