Excessive use of chemical fertilizers in agricultural practices have demonstrated a significant impact on microbial diversity and community in soil by altering soil physical and chemical properties, thereby leading to a certain degree of soil salinization and nutritional imbalances. As an organic amendment, maize straw has been widely used to improve soil quality; however, its effect on the soil bacterial community remains limited in Calcarie-Fluvie Cambisols soil in semi-humid arid plateau of North China. In the present experiment, we investigated the effects of continuous straw utilization and fertilization on bacterial communities in Shouyang, Shanxi province, China. Soil samples were collected from 5 different straw utilization and fertilization modes in the following ways: straw mulching (SM), straw crushing (SC), cattle manure (CM), in which way straw is firstly used as silage and then organic fertilizer, control with no straw return (NSR), and control without fertilizers (CK), same amount of N+P fertilizer was applied to the regimes except CK. High-throughput sequencing approaches were applied to the V3-V4 regions of the 16S ribosomal RNA for analysis of the bacterial abundance and community structures. Different long-term straw returning regimes significantly altered the physicochemical properties and bacterial communities of soil, among which CM had the most significant effects on soil fertility and bacterial diversity. Proteobacteria, Actinobacteria, Chloroflexi, Acidobacteria, and Gemmatimonadetes were consistently dominant in all soil samples, and Redundancy analysis (RDA) showed significant association of total nitrogen (TN), total phosphorus (TP) and available potassium (AK) with alternation of the bacterial community. Cattle manure had the most beneficial effects on soil fertility and bacterial diversity among different straw utilization and fertilization modes.

The application of organic fertilizer affects soil microbes and enzyme activities. In this study, we explored the effects of various long-term different fertilization treatments (manure, M; chemical fertilizer, NP; manure + chemical fertilizer, MNP; and no fertilizer, CK) on bacterial community structure and soil sucrase, urease, and alkaline phosphatase activities in Shaping, Hequ, China. High-throughput sequencing was used to amplify the third to the fourth hypervariable region of the 16S ribosomal RNA for analysis of the bacterial community structure. Enzyme activities were determined by colorimetry. Soil treated with MNP had the highest bacterial Abundance-based Coverage Estimator index and enzyme activities. The principal coordinates analysis results showed significant differences among the various fertilization treatments (p < 0.001). Proteobacteria, Actinobacteria, Acidobacteria, Gemmatimonadetes, and Chloroflexi were consistently dominant in all soil samples. The redundancy analysis and Monte Carlo permutation tests showed that the soil bacterial communities were significantly correlated with alkali-hydrolyzable nitrogen, organic matter, urease, and alkaline phosphatase. Our results reveal the fundamentally different effects that organic and inorganic fertilizers have on soil bacterial communities and their functions.

Soil eukaryotic microorganisms are important to biodiversity, and returning different kinds of organic materials to the field could improve the biodiversity of soil eukaryotic microorganisms. However, no detailed research has been conducted in the northern China semi-arid area in returning the different organic materials to the field and determining the status of eukaryotic microorganisms. Therefore, we explored the effects of various organic materials returning to the soil in combination with inorganic fertilizer on the diversity and community structure of eukaryotic microorganisms in Shanxi province, China. Soil samples were collected from five different fertilization treatments: chemical fertilizer (F), chemical fertilizer + cattle manure (FM), chemical fertilizer + straw (FS), chemical fertilizer + pig manure (FC) and control without fertilizers (CK). High-throughput sequencing was applied to analyze the eukaryotic diversity and community structure. Results showed that the dominant eukaryotic microorganisms among soil samples were Fungi, Viridiplantae, Metazoa and Protist. Although α-diversity was not significantly different among the five treatments, principal coordinate analysis and permutational multivariate analysis of variance illustrated significant differences (p < 0.001) in β-diversity of eukaryotic microorganism under treatments with different organic materials. Redundancy analysis showed that the soil properties, including total potassium, available nitrogen, available potassium and organic matter were the main factors attributed to eukaryotic microorganisms’ community structure in this region.