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The intention of the article is to demonstrate how data from historical maps might be applied in the process of flood risk assessment in peri-urban zones located in floodplains and be complementary datasets to the national flood maps. The research took place in two industrial parks near the rivers Žitava and Nitra in the town of Vráble (the oldest industrial park in Slovakia) and the city of Nitra (one of the largest industrial parks in Slovakia, which is still under construction concerning the Jaguar Land Rover facility). The historical maps from the latter half of the 18th and 19th centuries and from the 1950s of the 20th century, as well as the field data on floods gained with the GNSSS receiver in 2010 and the Q100 flood line of the national flood maps (2017), were superposed in geographic information systems. The flood map consists of water flow simulation by a mathematical hydrodynamic model which is valid only for the current watercourse. The comparison of historical datasets with current data indicated various transformations and shifts of the riverbanks over the last 250 years. The results proved that the industrial parks were built up on traditionally and extensively used meadows and pastures through which branched rivers flowed in the past. Recent industrial constructions intensified the use of both territories and led to the modifications of riverbeds and shortening of the watercourse length. Consequently, the river flow energy increased, and floods occurred during torrential events in 2010. If historical maps were respected in the creation of the flood maps, the planned construction of industrial parks in floodplains could be limited or forbidden in the spatial planning documentation. This study confirmed that the flood modelling using the Q100 flood lines does not provide sufficient arguments for investment development groups, and flood maps might be supplied with the data derived from historical maps. The proposed methodology represents a simple, low cost, and effective way of identifying possible flood-prone areas and preventing economic losses and other damages.