No abstract

This study represents the first molecular survey of the ichthyofauna of Taal Lake and the first DNA barcoding attempt in Philippine fishes. Taal Lake, the third largest lake in the Philippines, is considered a very important fisheries resource and is home to the world's only freshwater sardine, Sardinella tawilis. However, overexploitation and introduction of exotic fishes have caused a massive decline in the diversity of native species as well as in overall productivity of the lake. In this study, 118 individuals of 23 native, endemic and introduced fishes of Taal Lake were barcoded using the partial DNA sequence of the mitochondrial cytochrome c oxidase subunit I (COI) gene. These species belong to 21 genera, 17 families and 9 orders. Divergence of sequences within and between species was determined using Kimura 2-parameter (K2P) distance model, and a neighbour-joining tree was generated with 1000 bootstrap replications using the K2P model. All COI sequences for each of the 23 species were clearly discriminated among genera. The average within species, within genus, within family and within order percent genetic divergence was 0.60%, 11.07%, 17.67% and 24.08%, respectively. Our results provide evidence that COI DNA barcodes are effective for the rapid and accurate identification of fishes and for identifying certain species that need further taxonomic investigation.

Laguna de Bay, the largest lake in the Philippines, is an important part of the country's fisheries industry. It is also home to a number of endemic fishes including Gobiopterus lacustris (Herre 1927) of family Gobiidae, Leiopotherapon plumbeus (Kner 1864) of family Terapontidae, Zenarchopterus philippinus (Peters 1868) of family Hemiramphidae and Arius manillensis Valenciennes 1840 of family Ariidae. Over the years, a steady decline has been observed in the abundance and diversity of native fishes in the lake due to anthropogenic disturbances. In this study, a total of 71 specimens of 18 different species belonging to 18 genera, 16 families, and seven orders were DNA barcoded using the mitochondrial cytochrome c oxidase subunit I (COI) gene. All of the fish species were discriminated by their COI sequences and one endemic species G. lacustris, showing deep genetic divergence, was highlighted for further taxonomic investigation. Average Kimura 2-parameter genetic distances within species, family, and order were 1.33%, 18.91%, and 24.22%, respectively. These values show that COI divergence increases as taxa become less exclusive. All of the COI sequences obtained were grouped together according to their species designation in the Neighbor-joining tree that was constructed. This study demonstrated that DNA barcoding has great potential as a tool for fast and accurate species identification and also for highlighting species that warrant further taxonomic investigation.

Summary A number of researchers have applied multivariate methods to elucidate the population structure of fishes. In this study, we also used multivariate techniques to examine meristic and morphological variations in the silver perch, Leiopotherapon plumbeus (Kner, 1864), from three Philippine lakes, namely, Laguna de Bay, Sampaloc Lake, and Taal Lake. We also aimed to determine whether or not there are meristic and morphological differences among the populations of silver perch from the three lakes, considering that this fish species was introduced from Laguna de Bay into Sampaloc Lake and Taal Lake in the late 1950s and early 1970s, respectively. A total of 710 specimens from four different sites were used in the study: 155 each from Binangonan and Tanay areas of Laguna de Bay and 200 each from Sampaloc Lake and Taal Lake. Based on analysis of variance, eight meristic and 26 transformed morphometric characters were selected for subsequent analyses. Nineteen (19) principal components extracted from the 34 significant variables accounted for 82.3% of the variation in the original variables. Factor analysis using varimax rotation produced four factors: factor 1 was dominated by fin measurements while the highest loadings for factor 2 were gill raker counts. Factors 3 and 4 were dominated by various body and head measurements. Cluster analysis showed specimens from Sampaloc Lake and Taal Lake in one group, while majority of the specimens from Binangonan and Tanay are in another cluster. This suggests a closer morphological similarity between specimens from Sampaloc and Taal. Discriminant analysis gave relatively high correct classification rates (76.13–95.50%). Lower gill raker count was the most discriminating variable. Since both the silver perch from Sampaloc Lake and Taal Lake were introduced from Laguna de Bay, the observed clustering and morphological variation could be attributed to similarities and differences in the lake environments. Laguna de Bay is a shallow eutrophic lake, while Sampaloc Lake and Taal Lake are deep lakes. Further studies, however, are needed to determine which of the myriad of biological and/or physico–chemical factors might have the greatest influence on the observed morphological divergence between the source population and transplanted populations that we found in our study.