The intrinsic permeability is a crucial parameter to characterise and quantify fluid flow through porous media. However, this parameter is typically uncertain, even if the geometry of the pore structure is available. In this paper, we perform a comparative study of experimental, semi-analytical and numerical methods to calculate the permeability of a regular porous structure. In particular, we use the Kozeny–Carman relation, different homogenisation approaches (3D, 2D, very thin porous media and pseudo 2D/3D), pore-scale simulations (lattice Boltzmann method, Smoothed Particle Hydrodynamics and finite-element method) and pore-scale experiments (microfluidics). A conceptual design of a periodic porous structure with regularly positioned solid cylinders is set up as a benchmark problem and treated with all considered methods. The results are discussed with regard to the individual strengths and limitations of the used methods. The applicable homogenisation approaches as well as all considered pore-scale models prove their ability to predict the permeability of the benchmark problem. The underestimation obtained by the microfluidic experiments is analysed in detail using the lattice Boltzmann method, which makes it possible to quantify the influence of experimental setup restrictions.

Graphical abstract

The outcome of vertebroplasty is hard to predict due to its dependence on complex factors like bone cement and marrow rheologies. Cement leakage could occur if the procedure is done incorrectly, potentially causing adverse complications. A reliable simulation could predict the patient-specific outcome preoperatively and avoid the risk of cement leakage. Therefore, the aim of this work was to introduce a computationally feasible and experimentally validated model for simulating vertebroplasty. The developed model is a multiphase continuum-mechanical macro-scale model based on the Theory of Porous Media. The related governing equations were discretized using a combined finite element–finite volume approach by the so-called Box discretization. Three different rheological upscaling methods were used to compare and determine the most suitable approach for this application. For validation, a benchmark experiment was set up and simulated using the model. The influence of bone marrow and parameters like permeability, porosity, etc., was investigated to study the effect of varying conditions on vertebroplasty. The presented model could realistically simulate the injection of bone cement in porous materials when used with the correct rheological upscaling models, of which the semi-analytical averaging of the viscosity gave the best results. The marrow viscosity is identified as the crucial reference to categorize bone cements as ‘high- ’or ‘low-’ viscosity in the context of vertebroplasty. It is confirmed that a cement with higher viscosity than the marrow ensures stable development of the injection and a proper cement interdigitation inside the vertebra.

Understanding sub-cellular mechanics is crucial for a better understanding of a variety of biological functions and dysfunctions. A structure-function analysis of the cytoskeletal protein networks provides not only ways to deduce from its structure insights into its mechanical behaviour but potentially also new insights into sub-cellular processes such as mechano-transduction, stiffness-induced cytoskeletal restructuring and stiffness changes, or mechanical aspects of cell-biomaterial interactions. Recently, fluorescence imaging has become a powerful tool to study protein network structures at high resolution. Yet, automated tools for quantitative functional analysis of these complex structures, are missing. These, however, are needed to relate structural characteristics to cellular functionality. Here, we present a machine learning framework that combines 3D imaging and mechanical modelling on the nano scale, enabling prediction of mechanical behaviour of protein networks and the subsequent automatic extraction of structural features of which one can deduce mechanical characteristics. This study demonstrates the method's applicability to investigate the skeleton's functionality of the Filamentous Temperature Sensitive Z (FtsZ) family inside organelles (here, chloroplasts) of the moss Physcomitrella patens.

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