The elements of the socio-economic system function in the dynamics that correspond to the periods of rise and fall in the efficiency of activity. Recessions are characterized by problems (obstacles), which are also found in the functioning of the innovation infrastructure as one of the elements of the system. The article systematizes the problems of the functioning of the innovation infrastructure to accelerate the recovery from the downturn. The goal was achieved through the analysis of management systems and regulation of innovation infrastructure by studying strategic planning documents, the effectiveness of their implementation in practice and identifying their compliance with reality in the context of ongoing digitalization.