One of the main directions to increasing efficiency of computing systems related with making of heterogeneous platform which allow more effectively to use computing resources of conventional processors, graphics processing units and coprocessors based on FPGA for performance of massively-parallel computing oriented tasks. The creation of task-oriented solutions, allowing the user to configure computing technique for solving specific application tasks and giving a chance to quickly and with a low cost to reconfigure the system to another type of task is an actual problem. The domestic computing platform that can simultaneously use modules with different architectures in different configurations to solve a common problem is described in the article. The description and results of the simulation software aimed at solving problems in the field of hydroacoustics and radiolocation in order to implement the joint interaction of computing resources of different architecture and to assess the prospects of further application of the platform in resource-intensive applications are presented in the article.