Respiration utilizing NAD-linked substrates in mitochondria isolated from cotyledons of etiolated peas (Pisum sativum L. var Palmer (18) questions the biochemical benefit to be derived from density gradient purification of mitochondria, and many workers have used mitochondria prepared by simple differential centrifugation in their studies of rotenone resistance. The validity of this procedure for such studies is investigated in this paper. Another practice that could lead to erroneous results is the seemingly indiscriminate use of inhibitors and cofactors to activate and stimulate the rotenone-resistant pathway. The present investigation was done using only rotenone as the activator of the pathway.Aspects of this study included the relationship of the rotenoneresistant pathway to the cyanide-resistant pathway, substrate and cofactor effects, and the mechanism for deactivation of rotenone. The enzymes for the oxidation of malate were also studied. On the basis of these results, a possible explanation for the control and operation of the rotenone-resistant pathway was developed. Miracloth, and the filtrate was then centrifuged at 700g for 7 min in a Beckman J-21B centrifuge in a JA-20 rotor. The pellet was discarded, and the supernatant layer was centrifuged at 21,000g for 5 min in a Beckman JA-20 rotor. The pellet was resuspended in 50 ml ice cold wash medium (0.3 M mannitol, 25 mm Tes, and 0.3% fatty-acid-poor BSA) and recentrifuged at 21,000g for 5 min. The pellet was then resuspended in 3 ml suspension medium (0.3 M mannitol, 4 mm MgC12, and 25 mm Tes) and loaded onto a sucrose density gradient (26 ml 0.6 M sucrose and 10 ml 1.6 M sucrose, both with 50 mi Tes and 0.1% BSA) or used as such for mitochondria prepared by differential centrifugation. After loading it onto the gradient, the pellet was centrifuged for 1 h at 30,000g in a Beckman L2-65B ultracentrifuge with a SW27 rotor. The fraction at the interface was removed and diluted slowly with a buffered solution (25 mim Tes and 0.1% BSA). The fraction was then centrifuged for 5 min at 21,000g, and the pellet was resuspended in the suspension medium used above. All solutions were adjusted to pH 7.1 at 25 C with KOH. All steps of the isolation were carried out at 0 to 4 C.Respiratory