The glycan core structures of the glycosyl-phosphatidylinositol (GPI) anchors on porcine and human renal membrane dipeptidase (EC 3.4.13.19) were determined following deamination and reduction by a combination of liquid chromatography, exoglycosidase digestions, and methylation analysis. The glycan core was found to exhibit microheterogeneity with three structures observed for the porcine GPI anchor: Man␣1-2Man␣1-6Man␣1-4GlcN (29% of the total population), Man␣1-2Man␣1-6(GalNAc1-4)Man␣1-4GlcN (33%), and Man␣1-2Man␣1-6(Gal1-3GalNAc1-4)Man␣1-4GlcN (38%). The same glycan core structures were also found in the human anchor but in slightly different proportions (25, 52, and 17%, respectively). Additionally, a small amount (6%) of the second structure with an extra mannose ␣(1-2)-linked to the non-reducing terminal mannose was also observed in the human membrane dipeptidase GPI anchor. A small proportion (maximally 9%) of the porcine GPI anchor structures was found to contain sialic acid, probably linked to the GalNAc residue. The porcine GPI anchor was found to contain 2.5 mol of ethanolamine/mol of anchor. Negative-ion electrospray-mass spectrometry revealed the presence of exclusively diacyl-phosphatidylinositol (predominantly distearoyl-phosphatidylinositol with a minor amount of stearoyl-palmitoyl-phosphatidylinositol) in the porcine membrane dipeptidase anchor. Porcine membrane dipeptidase was digested with trypsin and the C-terminal peptide attached to the GPI anchor isolated by removal of the other tryptic peptides on anhydrotrypsin-Sepharose. The sequence of this peptide was determined as ThrAsn-Tyr-Gly-Tyr-Ser, thereby identifying the site of attachment of the GPI anchor as Ser
368. This work represents a comprehensive study of the GPI anchor structure of porcine membrane dipeptidase and the first interspecies comparison of mammalian GPI anchor structures on the same protein.
Glycosyl-phosphatidylinositol (GPI)1 membrane anchors are present in organisms at most stages of eukaryotic evolution, including protozoa, yeast, slime molds, invertebrates, and vertebrates, and are found on a diverse range of proteins. They are primarily responsible for the anchoring of cell-surface proteins in the plasma membrane and may be considered as an alternative to the hydrophobic transmembrane polypeptide anchor of integral membrane proteins. Many other functions have been proposed for GPI anchors, including roles in intracellular sorting, transmembrane signaling, and the novel endocytic process of potocytosis. A GPI anchor might also allow the protein to associate in membrane microdomains or be selectively released from the cell-surface by phospholipases. These functions, as well as the structure, biosynthesis, and distribution of GPI anchors have been extensively reviewed (Ferguson and