Gastrointestinal stromal tumors (GISTs) are the most frequently occurring mesenchymal tumors of the gastrointestinal tract. Telomerase activity is well acknowledged as a critical factor in oncogenesis. The objective of the present study is to evaluate the effect of BMI gene silencing on proliferation, apoptosis and telomerase activity in human GIST882 cells. GIST882 cells were transfected with a eukaryotic expression vector of an shRNA fragment. The silencing efficiency in the GIST882 cells was determined by RT‐qPCR and a western blot analysis. After the shRNA‐BMI‐1 plasmid was transfected into the GIST882 cells and nude mice, a cell counting kit‐8 (CCK‐8) assay and flow cytometry were utilized to detect the GIST882 cell proliferation, the apoptosis rate and the cell cycle. Tumor growth was observed by tumor xenograft in nude mice. Telomerase activity and telomere length were detected by a Southern blot and a target region amplified polymorphism. The shRNA‐BMI‐1 recombinant plasmid was successfully constructed. The mRNA and protein expression of the BMI‐1 gene in GIST882 cells was suppressed by the shRNA‐BMI‐1 recombinant plasmid. Meanwhile, BMI‐1 gene silencing inhibited the cell proliferation, tumor growth, and cell cycle in the GIST882 cells. However, cell apoptosis was increased and telomerase activity was decreased with the silencing of the BMI‐1 gene. Collectively, the results of this study suggest that silencing the BMI‐1 gene may provide a new target for the treatment of GISTs.