The nonoxidative decarboxylation of aromatic acids occurs in a range of microbes and is of interest for bioprocessing and metabolic engineering. Although phenolic acid decarboxylases provide useful tools for bioindustrial applications, the molecular bases for how these enzymes function are only beginning to be examined. Here we present the 2.35-Å-resolution X-ray crystal structure of the ferulic acid decarboxylase (FDC1; UbiD) from Saccharomyces cerevisiae. FDC1 shares structural similarity with the UbiD family of enzymes that are involved in ubiquinone biosynthesis. The position of 4-vinylphenol, the product of p-coumaric acid decarboxylation, in the structure identifies a large hydrophobic cavity as the active site. Differences in the 2e-␣5 loop of chains in the crystal structure suggest that the conformational flexibility of this loop allows access to the active site. The structure also implicates Glu285 as the general base in the nonoxidative decarboxylation reaction catalyzed by FDC1. Biochemical analysis showed a loss of enzymatic activity in the E285A mutant. Modeling of 3-methoxy-4-hydroxy-5-decaprenylbenzoate, a partial structure of the physiological UbiD substrate, in the binding site suggests that an ϳ30-Å-long pocket adjacent to the catalytic site may accommodate the isoprenoid tail of the substrate needed for ubiquinone biosynthesis in yeast. The three-dimensional structure of yeast FDC1 provides a template for guiding protein engineering studies aimed at optimizing the efficiency of aromatic acid decarboxylation reactions in bioindustrial applications.T he chemical production of benzenoids, such as styrene, from petroleum provides a wide range of building blocks for use in paints, dyes, plastics, and synthetic pharmaceuticals. Current styrene production involves the energy-intensive dehydrogenation of petroleum-derived ethylbenzene and yields more than 30 million tons of material each year (1). As an alternative to petroleumbased synthesis, research into finding renewable sources of benzenoid compounds in nature has focused attention on multiple plant and microbial pathways. Substituted cinnamic acids are abundant molecules in plant lignin polymers and can provide feedstocks for microbial bioprocessing methods aimed at yielding value-added products (2, 3). Degradation of lignin releases ferulic and p-coumaric acids that can be converted to 4-vinylguaicol (4-ethenyl-2-methoxyphenol) and 4-vinylphenol (4-ethenylphenol), respectively, and other hydroxycinnamates can be metabolized to vanillin as a natural flavoring in foods, beverages, and other products (4, 5). Related aromatic compounds are also natural components in wine and other fermented beverages and food (6-8). Similarly, other production routes for catechol and styrene, using microbes that metabolize benzenoid molecules by nonoxidative decarboxylation, have also been explored recently (8-10). For example, overexpression of phenylalanine ammonia lyase from Arabidopsis thaliana and of ferulic acid decarboxylase (FDC) from Saccharomyces cerevis...