Methane emissions and below ground methane pore water concentrations were determined in an alpine fen at 1,915 m a.s.l. in central Switzerland. The fen represented an acidic (pH 4.5-4.9), nutrient-poor to mesotrophic habitat dominated by Carex limosa, Carex rostrata, Trichophorum caespitosum and Sphagnum species. From late fall to late spring the fen was snow-covered. Throughout winter the temperatures never dropped below 0°C at 5 cm below the vegetation surface. Methane emissions in June, July, August and September were in the range of 125 (±26)-313 (±71) mg CH 4 m -2 day -1 with a tendency to decrease along the summer season. Mean methane pore water concentrations at a depth of 20-40 cm below the vegetation surface were 526 (±32) lM in June and in the range of 144 (±10)-233 (±7) lM in July, August and September. At a depth of 0-20 cm the mean methane pore water concentrations dropped back to \20 lM with an almost linear decrease between 0 and 15 cm. Oxygen pore water concentrations were close to air saturation in the first few centimeters and dropped back below detection limit at a depth of 20 cm. In July and August the pore water concentrations of dissolved organic carbon (DOC) were in the range of 7.2-10.1 mg C l -1 at all depths. The pore water concentrations of acetate, formate and oxalate were in the range of 2.0-8.2 lM at all depths. Methanotrophic and methanogenic communities were quantified using pmoA and mcrA, respectively, as marker genes. The abundances of both communities showed a distinct peak at a depth of 10-15 cm below the vegetation surface.