Dengue virus (DV) is a member of the family Flaviviridae. These positive strand RNA viruses encode a polyprotein that is processed in case of DV into 10 proteins. Although for most of these proteins distinct functions have been defined, this is less clear for the highly hydrophobic non-structural protein (NS) 4B. Despite its possible role as an antagonist of the interferon-induced antiviral response, this protein may play an additional more direct role for viral replication. In this study we determined the subcellular localization, membrane association, and membrane topology of DV NS4B. We found that NS4B resides primarily in cytoplasmic foci originating from the endoplasmic reticulum. NS4B colocalizes with NS3 and double-stranded RNA, an intermediate of viral replication, arguing that NS4B is part of the membrane-bound viral replication complex. Biochemical analysis revealed that NS4B is an integral membrane protein, and that its preceding 2K signal sequence is not required for this integration. We identified three membrane-spanning segments in the COOH-terminal part of NS4B that are sufficient to target a cytosolic marker protein to intracellular membranes. Furthermore, we established a membrane topology model of NS4B in which the NH 2 -terminal part of the protein is localized in the endoplasmic reticulum lumen, whereas the COOH-terminal part is composed of three trans-membrane domains with the COOH-terminal tail localized in the cytoplasm. This topology model provides a good starting point for a detailed investigation of the function of NS4B in the DV life cycle.
The mosquito-transmitted Dengue virus (DV)3 is the causative agent of dengue fever, the most prevalent arthropod-borne viral illness in humans with 50 -100 million individuals infected annually worldwide (1). Dengue fever is characterized by high fever, chills, body aches, and skin rash and ranges from mild, flu-like symptoms to severe forms, which are dengue hemorrhagic fever and the dengue shock syndrome. The four serotypes of DV identified so far (DV1-4) belong to the genus Flavivirus in the family Flaviviridae. Flaviviruses are small, enveloped viruses that have a single-stranded genomic RNA of positive polarity ϳ11 kb in length. This RNA serves as mRNA for translation of a large polyprotein (3,391 amino acids in case of DV2) at the rough endoplasmic reticulum. The viral polyprotein is co-and post-translationally processed into three structural proteins (C, prM, and E) and seven nonstructural proteins (NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5). The amino termini of prM, E, NS1, and NS4B are generated upon cleavage by the host signal peptidase in the lumen of the ER, whereas processing of most of the other NS proteins and the COOH terminus of the C protein is carried out by the viral two-component protease NS2B-3 in the cytoplasm of DV-infected cells (2-4). For cleavage of the COOH terminus of NS1 an unknown ER resident protease seems to be responsible (5). A Golgi-localized furin protease mediates cleavage of prM at a late state of infection to...