Vaccine-induced immunity has been shown to alter the course of a respiratory syncytial virus (RSV) infection both in murine models and in humans. To elucidate which mechanisms underlie the effect of vaccine-induced immunity on the course of RSV infection, transcription profiles in the lungs of RSV-infected mice were examined by microarray analysis. Three models were used: RSV reinfection as a model for natural immunity, RSV challenge after formalin-inactivated RSV vaccination as a model for vaccine-enhanced disease, and RSV challenge following vaccination with recombinant RSV virus lacking the G gene (⌬G-RSV) as a model for vaccine-induced immunity. Gene transcription profiles, histopathology, and viral loads were analyzed at 1, 2, and 5 days after RSV challenge. On the first 2 days after challenge, all mice displayed an expression pattern in the lung similar of that found in primary infection, showing a strong innate immune response. On day 5 after RSV reinfection or after challenge following ⌬G-RSV vaccination, the innate immune response was waning. In contrast, in mice with vaccine-enhanced disease, the innate immune response 5 days after RSV challenge was still present even though viral replication was diminished. In addition, only in this group was Th2 gene expression induced. These findings support a hypothesis that vaccine-enhanced disease is mediated by prolonged innate immune responses and Th2 polarization in the absence of viral replication.Respiratory syncytial virus (RSV) infection in infants can cause morbidity ranging from mild upper respiratory tract symptoms to severe bronchiolitis and even mortality (29). A small proportion of infected infants need hospitalization, whereas the majority develop only upper respiratory tract infection and recover in an outpatient setting (14). Known risk factors for more severe disease in children are age younger than 3 months, preterm birth, chronic lung disease of prematurity, congenital heart disease, Down's syndrome, cystic fibrosis, and immunodeficiency disorders (1,30,37). Besides infants, specific adult populations also are at risk to develop severe RSV infection, such as adults who are immunocompromised, aged, or institutionalized or have underlying diseases (8, 13). Both immunological mechanisms and virus-induced cytopathology may be keys to the variable severity of RSV bronchiolitis in infancy. The association between naturally occurring polymorphisms in innate immune response genes and the susceptibility to severe RSV bronchiolitis supports this theory (15,16,20,32).Murine models are widely used to study RSV-induced pathology. However, differences in RSV pathogenesis in relation to the genetic background of the mouse strain used have been described (19). These murine models have shown that a complex immune response is induced by RSV infection. However, high viral titers are needed to induce consistent histopathological changes in the lung (12). Generally, mice clear the virus without suffering severe lung pathology. Vaccination of mice with formalin-inac...