We present an integrated study of subsurface and surficial karst landforms to unravel the uplift history of karst landscape in a tectonically‐active area. To this end, we apply a multidisciplinary approach by combining cave geomorphology and Th/U dating of speleothems with remote sensing plus geophysical imaging of surface landforms. We use as an example Mt. Menikio in northern Greece where four caves share well‐defined epiphreatic/shallow phreatic characteristics that are related to the distribution of surface and buried doline fields and provide evidence for three distinct water table stillstands (e.g. expressed as cave levels) now lying at ~130 m, ~800 m and ~1600 m a.m.s.l. Our dating constraints delimit the age of the lower water table stillstand prior to 77 ka ago and imply a maximum rate of relative base level drop of 0.45 mma‐1, which is consistent with relative tectonic uplift rate estimates along currently active normal faults. We interpret the elevation of the higher water table stillstands to reflect earlier phases of uplift related to the regional tectonic events associated with the development of the North Anatolian Fault and the Northern Aegean area. Our analysis shows that the combined study of epiphreatic/shallow phreatic caves and surficial karst landforms together, is a robust way to investigate the uplift history of a karst landscape in a tectonically‐active setting. © 2019 John Wiley & Sons, Ltd.