Nitric oxide-derived reactive species have been implicated in many disorders. Protein nitrotyrosine is often used as a stable marker of these reactive species. Using immunohistochemistry, we have previously detected nitrotyrosine in murine Mutatect tumors, where neutrophils are the principal source of nitric oxide. We now report on the identification of several prominent nitrotyrosine-containing proteins. Using Western blot analysis, nitrotyrosine in higher molecular mass proteins (>20 kDa) was detected in tumors containing a high number of neutrophils but not in tumors with fewer neutrophils. Staining for nitrotyrosine was consistently seen in low molecular mass proteins (<15 kDa), regardless of the level of neutrophils. Protein nitrotyrosine was not seen in Mutatect cells growing in vitro. Treatment with nitric oxide donors produced nitration of <15-kDa proteins, but only after extended periods. These small proteins, both from tumors and cultured cells, were identified by mass spectrometry to be histones. Only a subset of tyrosine residues was nitrated. Selective nitration may reflect differential accessibility of different tyrosine residues and the influence of neighboring residues within the nucleosome. The prominence of histone nitration may reflect its relative stability, making this post-translational modification a potentially useful marker of extended exposure of cells or tissues to nitric oxide-derived reactive species.Nitric oxide (NO ⅐ ) 1 -derived reactive nitrogen oxide species (RNOS) are cytotoxic and mutagenic, and have been implicated in the pathogenesis of several inflammatory disorders (1-9). Inflammatory cells, such as macrophages, monocytes, and neutrophils produce a relatively large amount of RNOS. These reactive species may exert deleterious effects by modifying or damaging various cellular targets including DNA, lipids, and proteins (10 -12). One of the targets in proteins is tyrosine (Tyr), which can be converted into a fairly stable end-product, 3-nitrotyrosine (NTyr) (13). The presence of free NTyr amino acids or NTyr-containing proteins in biological samples is used as a molecular marker of RNOS production in a tissue (13). In addition, nitration of Tyr residues in proteins may alter protein function (4, 14 -17), which may have both physiological and pathological significance. The presence of protein NTyr has been reported in inflammatory disorders such as Helicobacter pylori infection, Crohn's disease, ulcerative colitis, Wegener's granulomatosis, cystic fibrosis, asthma, obliterative bronchiolitis, and rheumatoid arthritis (2-9). The level of protein NTyr has been found to correlate with the severity of inflammatory diseases (18 -20). Protein NTyr has also been detected in some tumors (21-24). A high level of protein NTyr correlates with poor outcome in melanoma patients (25). Although a high level of protein NTyr has been detected in vivo in human or animal diseases, only a limited number of NTyr-containing proteins has been identified (26 -34).Several methods have been employed to...