a b s t r a c tEndoplasmic reticulum aminopeptidases, ERAP1 and ERAP2, as well as Insulin regulated aminopeptidase (IRAP) play key roles in antigen processing, and have recently emerged as biologically important targets for manipulation of antigen presentation. Taking advantage of the available structural and substrateselectivity data for these enzymes, we have rationally designed a new series of inhibitors that display low micromolar activity. The selectivity profile for these three highly homologous aminopeptidases provides a promising avenue for modulating intracellular antigen processing.Ó 2013 Elsevier Ltd. All rights reserved.Human aminopeptidases of the oxytocinase subfamily of M1 aminopeptidases have recently been shown to play important roles in the function of the human adaptive immune response.1-4 Endoplasmic reticulum aminopeptidases 1 and 2 (ERAP1/2), as well as Insulin regulated aminopeptidase (IRAP) can generate key antigenic peptides that help the human body fight pathogens and cancer but at the same time they can also destroy several antigenic peptides by over-trimming. [5][6][7] Both functions can contribute to human disease by either promoting immune evasion or contributing to autoimmune responses. 8 Genetic polymorphisms in ERAP1 and ERAP2 have been associated with the individual's predisposition to numerous human diseases (reviewed in Ref. 8) and it has been suggested that this link is due to changes in their specificity and activity.
9-11Despite the important biological roles of ERAP1/2 on human health, very little is known on how to pharmacologically manipulate their function. Down-regulation of ERAP1 protein expression in experimental models has been shown to elicit novel cytotoxic responses in mice, 7 to induce Natural Killer cell responses against malignant cells leading to tumor rejection, 12 and to elicit nonclassical Major Histocompatibility Class Ib cytotoxic T-lymphocyte responses in vivo. 13 Some of these effects could be reproduced using the non-specific metalloprotease inhibitor Leucinethiol.
7-13These findings, along with the recent elucidation of the crystallographic structures of ERAP1, 14,15 ERAP2,16 and the accumulation of a large amount of specificity data for these peptidases, 17 have spurred interest towards the development of potent and selective inhibitors for these enzymes that could potentially control the generation of specific subsets of antigenic epitopes. Achievement of selectivity may be even more important than high potency in this case, since complete incapacitation of antigenic peptide generation may not be desired therapeutically as opposed to subtle modulation of a particular epitope's generation. This concept has been supported physiologically by demonstrating that relatively small changes in the enzymatic activity of ERAP1 due to a single nucleotide polymorphism can be either protective or predisposing to autoimmunity. 8,10,18 Since ERAP1, ERAP2 and IRAP are highly homologous, having sequencing identity at 50%, the design of inhibitors that demonstrate an...