2017
DOI: 10.1371/journal.pone.0169408
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A New Statistical Approach to Characterize Chemical-Elicited Behavioral Effects in High-Throughput Studies Using Zebrafish

Abstract: Zebrafish have become an important alternative model for characterizing chemical bioactivity, partly due to the efficiency at which systematic, high-dimensional data can be generated. However, these new data present analytical challenges associated with scale and diversity. We developed a novel, robust statistical approach to characterize chemical-elicited effects in behavioral data from high-throughput screening (HTS) of all 1,060 Toxicity Forecaster (ToxCast™) chemicals across 5 concentrations at 120 hours p… Show more

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Cited by 28 publications
(25 citation statements)
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“…All statistical estimations were done within ZAAP which uses the R platform ( https://www.r-project.org/ ) for analyses of various morphological and behavioral endpoints; details of analyses are described in our previous publications [ 21 23 ]. For mortality and morphology, statistical significance based on binary responses was computed as described in [ 21 , 22 ].…”
Section: Methodsmentioning
confidence: 99%
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“…All statistical estimations were done within ZAAP which uses the R platform ( https://www.r-project.org/ ) for analyses of various morphological and behavioral endpoints; details of analyses are described in our previous publications [ 21 23 ]. For mortality and morphology, statistical significance based on binary responses was computed as described in [ 21 , 22 ].…”
Section: Methodsmentioning
confidence: 99%
“…Briefly, significant differences between control and exposed fish were computed using a one-sided Fisher’s exact test, where adverse endpoints were tested to have a greater occurrence in exposed fish. For the photomotor response assay, an entropy score was calculated for each light phase interval and compared with the control group to compute a relative ratio, as described in [ 23 ]. For the startle response assay, the area under the curve (AUC) and peak response was calculated for the first startle only and compared to the first control startle response.…”
Section: Methodsmentioning
confidence: 99%
See 1 more Smart Citation
“…The larval photomotor response (LPR) assay was conducted at 120 hpf when the 96-well plates of larvae were placed into ZebraBox behavioral analysis chambers (Viewpoint Life Sciences) and larval movement tracked with ZebraLab motion analysis software for 18 min across 3 cycles of 3 min light: 3 min dark. The distance moved by each larva was integrated over 6 s binning periods, averaged for the test concentration, and area under the curve was calculated and compared to the on-plate control group as previously described [ 28 ].…”
Section: Methodsmentioning
confidence: 99%
“…Because of the complexity of intact organisms, including early life stages, in vivo assays allow a simultaneous evaluation of (the chemical effect on) many different physiological processes. An example is the use of the fish embryo toxicity assay (Zhang et al ). Although application of mechanistic in vitro bioassays may be more feasible in a monitoring context, they can only detect specific endpoints related to neurotoxicity, immunotoxicity, reproduction, and development, while other effects potentially contributing to such health outcomes may not be detected if nonspecific (in vivo) assays are not included.…”
Section: Selection Of Effect‐based Toolsmentioning
confidence: 99%