N-Succinyl-ll-diaminopimelate
aminotransferase (DAP-AT) (EC 2.6.1.17), a key enzyme in the
bacterial
pathway to l-lysine, was purified to near homogeneity
(1500-fold) in five steps from wild type Escherichia
coli
ATCC 9637. This pyridoxal phosphate (PLP) dependent enzyme has a
molecular weight of 39.9 kDa, appears to
form an active homodimer, and uses l-glutamate as the amino
group donor for its substrate,
N-succinyl-α-amino-ε-ketopimelic acid (1a) (K
m = 0.18
± 0.04 mM, k
cat = 86 ± 5
s-1). Progress of the reaction is
monitored by
spectrophotometric observation of decrease in NADPH concentration at
340 nm in a coupled enzyme assay with
l-glutamate dehydrogenase (EC 1.4.1.4).
Stereochemically pure 1a was synthesized as its
trilithium salt by ene
reaction of methyl glyoxylate with methyl
N-succinyl-l-allylglycinate (4a)
followed by hydrogenation of the double
bond, Dess−Martin oxidation of the alcohol, and careful lithium
hydroxide hydrolysis. Similar approaches allowed
synthesis of a series of substrate analogues
1b
−
g having different
N-acyl substituents, as well as derivatives
missing
the carboxyl group or the amide functionality (13 and
17, respectively). Compounds lacking the keto
functionality
(18a, 18c, and 19) were also prepared.
Assay of DAP-AT shows that the enzyme has quite strict
requirements for
substrate recognition, but it will accept compounds with an aromatic
ring in place of the terminal succinyl carboxyl
group in 1a (e.g. N-Cbz-α-amino-ε-ketopimelic
acid (1c)). Reaction of substrates
1a,c with hydrazine hydrate followed
by NaCNBH3 reduction gives
2-(N-(succinylamino))- (20a) and
2-(N-Cbz-amino)-6-hydrazinoheptane-1,7-dioic
acids
(20c), respectively. These are the most potent
slow-binding inhibitors of any DAP-metabolyzing enzyme
reported
so far (K
i* for DAP-AT: 20a is 22
± 4 nM; 20c is 54 ± 9 nM).