Chemical
proteomics methods have been used as effective tools to
identify novel protein targets for small molecules. These methods
have great potential to be applied as environmental toxicants to figure
out their mode of action. However, these assays usually generate dozens
of possible targets, making it challenging to validate the most important
one. In this study, we have integrated the cellular thermal shift
assay (CETSA), quantitative proteomics, metabolomics, computer-assisted
docking, and target validation methods to uncover the protein targets
of monoethylhexyl phthalate (MEHP). Using the mass spectrometry implementation
of CETSA (MS-CETSA), we have identified 74 possible protein targets
of MEHP. The Gene Ontology (GO) enrichment integration was further
conducted for the target proteins, the cellular dysregulated proteins,
and the metabolites, showing that cell cycle dysregulation could
be one primary change due to the MEHP-induced toxicity. Flow cytometry
analysis confirmed that hepatocytes were arrested at the G1 stage
due to the treatment with MEHP. Subsequently, the potential protein
targets were ranked by their binding energy calculated from the computer-assisted
docking with MEHP. In summary, we have demonstrated the development
of interactomics workflow to simplify the redundant information from
multiomics data and identified novel cell cycle regulatory protein
targets (CPEB4, ANAPC5, and SPOUT1) for MEHP.