The secretarybird (Sagittarius serpentarius) is a threatened African raptor species, and as such requires conservation attention. While the species is managed under a European Association of Zoos and Aquaria (EAZA) Ex‐situ Programme (EEP), no studies of mortality are currently available. A retrospective mortality project was therefore conducted to identify the most common causes of death in captive secretarybirds, with a view to informing management decisions. Data were collected by requesting the postmortem reports from zoos where secretarybirds had died and combining this with the existing data recorded in the Zoological Information Management System. Overall, 167 birds were recorded as having died within the EEP population, of which post‐mortem information was available for 51 (30.54%) individuals. Trauma was the most common cause of death identified (22 birds, 13.17%), with infection appearing as the second most prevalent cause (15 birds, 8.98%). One incidental finding at postmortem was that many (9) birds showed evidence of liver damage, with reports of bacterial hepatitis, staphylococcal infection, lesions, and dark coloration. Further research into liver complications and diet composition for secretarybirds may therefore have value in reducing mortality. Similarly, investigating strategies to reduce trauma caused by other enclosure occupants or conspecifics may have value in lengthening lifespans for this endangered species.