Formalin-fixed
neuroendocrine tissues from American cockroaches
(Periplaneta americana) embedded in
paraffin more than 30 years ago were recently analyzed by matrix-assisted
laser desorption/ionization mass spectrometry imaging (MALDI-MSI),
to reveal the histological localization of more than 20 peptide ions.
These represented protonated, and other cationic species of, at least,
14 known neuropeptides. The characterization of peptides in such historical
samples was made possible by a novel sample preparation protocol rendering
the endogenous peptides readily amenable to MSI analysis. The protocol
comprises brief deparaffinization steps involving xylene and ethanol,
and is further devoid of conventional aqueous washing, buffer incubations,
or antigen retrieval steps. Endogenous secretory peptides that are
typically highly soluble are therefore retained in-tissue with this
protocol. The method is fully “top-down”, that is, without
laborious in situ enzymatic digestion that typically disturbs the
detection of low-abundance endogenous peptides by MSI. Peptide identifications
were supported by accurate mass, on-tissue tandem MS analyses, and
by earlier MALDI-MSI results reported for freshly prepared P. americana samples. In contrast to earlier literature
accounts stating that MALDI-MSI detection of endogenous peptides is
possible only in fresh or freshly frozen tissues, or exceptionally,
in formalin-fixed, paraffin-embedded (FFPE) material of less than
1 year old, we demonstrate that MALDI-MSI works for endogenous peptides
in FFPE tissue of up to 30 years old. Our findings put forward a useful
method for digestion-free, high-throughput analysis of endogenous
peptides from FFPE samples and offer the potential for reinvestigating
archived and historically interesting FFPE material, such as those
stored in hospital biobanks.